| File | Score | motif | Controls |
| fa/mm2.inc_1.0.down.fa | 8.2430 | GTAAGT | 4.812874 (4.6526-5.0217 N=100) |
| fa/mm2.inc_1.0.up.fa | 5.7780 | TTTGTTTTC | 4.812373 (4.6306-4.9651 N=100) |
| fa/mm2.inc_1.5.down.fa | 5.0508 | TTCATTC | 4.943499 (4.7467-5.1869 N=100) |
| fa/mm2.inc_1.5.up.fa | 5.5844 | TTGTTTCC | 4.940366 (4.7515-5.2474 N=100) |
| fa/mm2.inc_2.down.fa | 5.6733 | TTCATCC | 5.233616 (4.9518-5.9128 N=100) |
| fa/mm2.inc_2.up.fa | 6.1537 | TGCTTTCC | 5.252289 (4.9432-5.6162 N=100) |
| fa/mm2.skip_1.0.down.fa | 8.2588 | GTAAGTA | 4.818794 (4.6099-5.0687 N=100) |
| fa/mm2.skip_1.0.up.fa | 5.2715 | TTTTTCT | 4.809418 (4.6544-5.0309 N=100) |
| fa/mm2.skip_1.5.down.fa | 8.3395 | GTAAGT | 4.938831 (4.7528-5.2256 N=100) |
| fa/mm2.skip_1.5.up.fa | 4.7142 | AAGAGAT | 4.913956 (4.7378-5.2490 N=100) |
| fa/mm2.skip_2.down.fa | 5.1675 | CTTGTCT | 5.248134 (4.9915-5.6682 N=100) |
| fa/mm2.skip_2.up.fa | 5.3572 | CTTTAGTT | 5.257709 (4.9928-5.7122 N=100) |