| File | Score | motif | Controls |
| fa/mm2.inc_0.down.fa | 6.0551 | TCCTGGC | 6.01002 (5.5284-6.4722 N=100) |
| fa/mm2.inc_0.up.fa | 5.9884 | GCCTTGC | 5.962829 (5.6488-6.4901 N=100) |
| fa/mm2.inc_1.0.down.fa | 6.0551 | TCCTGGC | 5.972148 (5.5829-6.4508 N=100) |
| fa/mm2.inc_1.0.up.fa | 5.9884 | GCCTTGC | 5.985609 (5.5562-6.5837 N=100) |
| fa/mm2.inc_1.5.down.fa | 6.2219 | TGCCTGT | 6.09029 (5.7390-6.6785 N=100) |
| fa/mm2.inc_1.5.up.fa | 6.0421 | GCCTTGC | 6.102187 (5.7472-6.7502 N=100) |
| fa/mm2.inc_2.down.fa | 7.1820 | GTAAGAT | 6.486987 (6.0568-7.5844 N=100) |
| fa/mm2.inc_2.up.fa | 6.3589 | GGTGGCC | 6.472175 (6.0118-7.2411 N=100) |
| fa/mm2.skip_0.down.fa | 6.4485 | AACTCCA | 6.64104 (6.1541-7.4897 N=100) |
| fa/mm2.skip_0.up.fa | 6.6984 | CATGCTG | 6.647185 (6.1935-7.4607 N=100) |
| fa/mm2.skip_1.0.down.fa | 6.6862 | AACTCCA | 6.829752 (6.3197-7.8593 N=100) |
| fa/mm2.skip_1.0.up.fa | 6.7222 | TCATTGC | 6.810198 (6.2274-7.6735 N=100) |
| fa/mm2.skip_1.5.down.fa | 7.9421 | ATCCTGG | 7.582032 (6.9812-8.6165 N=100) |
| fa/mm2.skip_1.5.up.fa | 7.6709 | ATCATGC | 7.458178 (6.8387-9.1365 N=100) |
| fa/mm2.skip_2.down.fa | 12.0981 | TTCTAAC | 12.132992 (10.2653-14.3534 N=100) |
| fa/mm2.skip_2.up.fa | 12.8602 | CCCACTA | 12.254599 (10.5278-13.9851 N=100) |