Improbizer Results

Improbizer will display the results in parts. First it will display the profiles (consensus sequences with the probability of each base at each position) individually as they are calculated. The position of a profile in a sequence is indicated by upper case. The strength of the profile match is indicated by the score on the left. There will be a delay during this phase as each profile is calculated. Second Improbizer will display all profiles at once over each sequence. Each profile has it's own color and the stronger the profile matches the darker it will appear in the sequence. Finally there will be a graphic summary of all the profiles at the end, using the same color conventions.

Looking for 4 motifs in 12 sequences. Longest sequence is 150 bases.

Settings are use location; don't include reverse complement; 1 occurrences per sequence; right align; restrain expansionist tendencies 6.000000; number of sequences in initial scan 1000; background model m2; background data fa/mm2.control.gold.up.fa;

6.3589 @ 50.17 sd 25.99 GGTGGCC
	a  0.003 0.003 0.003 0.003 0.168 0.003 0.003 
	c  0.081 0.329 0.169 0.003 0.003 0.990 0.417 
	g  0.748 0.581 0.086 0.831 0.825 0.003 0.252 
	t  0.169 0.086 0.742 0.163 0.003 0.003 0.328 
 8.81 G6833180@J909217_RC@j_at.-.chr1:172513889-172514039 tagactaggctggcttcaaactcatgaacgccttccccagtgctaaggttaaccgtgtatactcccacGCCGGCCagcctttgggtgagatttttaagagctcttttctgcagacttgggtttacactgttgccacccccatttctgcag
 7.07 G6849168@J911119_RC@j_at.-.chr10:91329316-91329466  gaactcatctttctacctagttgtggctGGTGGCTaaagctgcatactagtgatagtactataccaaaaggaaatagtttttttttttccttcccctcgacttccttagtctctgaagaaataattgatcttttttcttcaatcaaacag
 6.68 G6995328@J926515@j_at.+.chr19:26965931-26966081     GCTGGCGaaggatctgcctggcttccactacccagtgtgcctgtgtacctgaccactgagccccaggtgttgcacttccaggcagcacgggagcagcaactttgcactgaccagtttggaggctcttttgagactgtatgtcatcaacag
 7.29 G7055471@J926776_RC@j_at.-.chr19:40004774-40004924  atggaaacccagtggccGTCGGCCgcaaatatctggtgtcatctgaatgtggtggtgtggtacgtgtatttgctcatgctttttctttgaatcctttccaatgtgacatctgctaaaatgtctcccttatgatttgcttggtgatcacag
 5.09 G7055471@J926782_RC@j_at.-.chr19:40026648-40026798  atagaagttgtgtccgtaagtccctttgacagtgatctttaatgtctcttccttgttcaccgatgccttcctccttagttgcttaTGTGGCCattttccgttaagctggaccagatgattcactgcctgttttatgcaatttcatggcag
 7.29 G7055471@J926807_RC@j_at.-.chr19:40101047-40101197  atttttaaggactgcatccacggctctcttcattgttctTGTGGCGtaggcagtttcctcctattgtccccacacagttcctcgacttgcctgagcggctcccaaatgttgtttctggatgcaccgtttaccctcttgtgtttccaacag
 6.64 G7022373@J930882@j_at.+.chr3:33935929-33936079      ttgcttttgttcggaggtgggtacccagcgtaaaattttgaaattgGGTGACCcaccactagtttactttaatagtgaaattattctttatccataatagaacttagaaatatttttcaacacctgtaatttttttctcatctttaacag
 7.87 G7100883@J934567@j_at.+.chr4:136915386-136915536    cactgccaactgtggttgtggtgtgcagtcagttccagtgtcgtGGTGGCCttctcctgtctctgcctttgcccacggctgccaggttcttgttcggcattgctgttgctctcttgctgtggcttcaccctctctgaacactctctgtag
 6.54 G7102920@J935010_RC@j_at.-.chr4:143261858-143262008 catggccaggatctgtccctctcctccttgtttgtttgtccctgtGCTGGCTcctttccgtctctgcttggcaggggttggattcttatcatggctccaagagtctgctgtgccctttaccctctgtactctttcgtttcaatttctcag
 5.96 G7243480@J936482@j_at.+.chr5:92070155-92070305      gcttggcagtctgagtttagtacacagaaaaaaagctttttggtaaacaaacttcacatttaatgaaaacacacacattcaaGGGGGCGgtttttcagtctggataaactatataatgcagtaactcagaatctctttatgttgtaaaag
 4.41 G7194535@J938668@j_at.+.chr6:50553863-50554013      taatttacaggcattataacaattacttagggaggaagttgctttaccaatgagtgaagtgatacaatgagccagtaGGTTACTtagattttgttaagttataagttaaaactctggctttatttatgcaattgaaaaatatatttttag
 2.66 G7224708@J948118@j_at.+.chr9:119301624-119301774    tatagatagatttagttatatatctaaaaagagctccaaagtttcatttcagtactatgaaatataccaaacaCCTTGCTttttatttttaaaacaactctgactcctttagttcctgatcttttttataaacttttcttttccttatag
6.6166 @ 71.49 sd 29.08 TTTACCCA
	a  0.085 0.249 0.167 0.825 0.003 0.003 0.332 0.662 
	c  0.003 0.085 0.086 0.003 0.908 0.827 0.496 0.003 
	g  0.003 0.003 0.003 0.168 0.003 0.003 0.168 0.003 
	t  0.909 0.663 0.744 0.003 0.086 0.166 0.003 0.332 
 7.55 G6833180@J909217_RC@j_at.-.chr1:172513889-172514039 tagactaggctggcttcaaactcatgaacgccttccccagtgctaaggTTAACCGTgtatactcccacgccggccagcctttgggtgagatttttaagagctcttttctgcagacttgggtttacactgttgccacccccatttctgcag
 8.64 G6849168@J911119_RC@j_at.-.chr10:91329316-91329466  gaactcatctttctacctagttgtggctggtggctaaagctgcatactagtgatagtacTATACCAAaaggaaatagtttttttttttccttcccctcgacttccttagtctctgaagaaataattgatcttttttcttcaatcaaacag
 4.07 G6995328@J926515@j_at.+.chr19:26965931-26966081     gctggcgaaggatctgcctggcttccACTACCCAgtgtgcctgtgtacctgaccactgagccccaggtgttgcacttccaggcagcacgggagcagcaactttgcactgaccagtttggaggctcttttgagactgtatgtcatcaacag
 5.32 G7055471@J926776_RC@j_at.-.chr19:40004774-40004924  atggaaacccagtggccgtcggccgcaaatatctggtgtcatctgaatgtggtggtgtggtacgtgtaTTTGCTCAtgctttttctttgaatcctttccaatgtgacatctgctaaaatgtctcccttatgatttgcttggtgatcacag
 7.57 G7055471@J926782_RC@j_at.-.chr19:40026648-40026798  atagaagttgtgtccgtaagtccctttgacagtgatctttaatgtctcttccttgTTCACCGAtgccttcctccttagttgcttatgtggccattttccgttaagctggaccagatgattcactgcctgttttatgcaatttcatggcag
 6.24 G7055471@J926807_RC@j_at.-.chr19:40101047-40101197  atttttaaggactgcatccacggctctcttcattgttcttgtggcgtaggcagtttcctcctattgtccccacacagttcctcgacttgcctgagcggctcccaaatgttgtttctggatgcaccgTTTACCCTcttgtgtttccaacag
 6.00 G7022373@J930882@j_at.+.chr3:33935929-33936079      ttgcttttgttcggaggtgggtacccagcgtaaaattttgaaattgggtgacccaccactagtttactttaatagtgaaattattcTTTATCCAtaatagaacttagaaatatttttcaacacctgtaatttttttctcatctttaacag
 6.76 G7100883@J934567@j_at.+.chr4:136915386-136915536    cactgccaactgtggttgtggtgtgcagtcagttccagtgtcgtggtggccttctcctgtctctgccTTTGCCCAcggctgccaggttcttgttcggcattgctgttgctctcttgctgtggcttcaccctctctgaacactctctgtag
 6.66 G7102920@J935010_RC@j_at.-.chr4:143261858-143262008 catggccaggatctgtccctctcctccttgtttgtttgtccctgtgctggctcctttccgtctctgcttggcaggggttggattcttatcatggctccaagagtctgctgtgcccTTTACCCTctgtactctttcgtttcaatttctcag
 3.81 G7243480@J936482@j_at.+.chr5:92070155-92070305      gcttggcagtctgagtttagtacacagaaaaaaagctttttggtaaacaaacttcacatttaatgaaaacacacacattcaagggggcggtttttcagtctggaTAAACTATataatgcagtaactcagaatctctttatgttgtaaaag
 8.29 G7194535@J938668@j_at.+.chr6:50553863-50554013      taatttacaggcattataacaattacttagggaggaagttgcTTTACCAAtgagtgaagtgatacaatgagccagtaggttacttagattttgttaagttataagttaaaactctggctttatttatgcaattgaaaaatatatttttag
 8.50 G7224708@J948118@j_at.+.chr9:119301624-119301774    tatagatagatttagttatatatctaaaaagagctccaaagtttcatttcagtactatgaaaTATACCAAacaccttgctttttatttttaaaacaactctgactcctttagttcctgatcttttttataaacttttcttttccttatag
6.5325 @ 104.86 sd 34.48 TTTTCAAT
	a  0.003 0.169 0.003 0.086 0.003 0.990 0.581 0.003 
	c  0.003 0.086 0.003 0.249 0.990 0.003 0.168 0.168 
	g  0.247 0.003 0.003 0.251 0.003 0.003 0.166 0.003 
	t  0.746 0.743 0.990 0.415 0.003 0.003 0.084 0.825 
 6.11 G6833180@J909217_RC@j_at.-.chr1:172513889-172514039 tagactaggctggcttcaaactcatgaacgccttccccagtgctaaggttaaccgtgtatactcccacgccggccagcctttgggtgagatttttaagagctcttttctgcagacttgggTTTACACTgttgccacccccatttctgcag
 6.21 G6849168@J911119_RC@j_at.-.chr10:91329316-91329466  gaactcatctttctacctagttgtggctggtggctaaagctgcatactagtgatagtactataccaaaaggaaatagtttttttttttccttcccctcgacttccttagtctctgaagaaataattgatctttttTCTTCAATcaaacag
 6.87 G6995328@J926515@j_at.+.chr19:26965931-26966081     gctggcgaaggatctgcctggcttccactacccagtgtgcctgtgtacctgaccactgagccccaggtgttgcacttccaggcagcacgggagcagcaacTTTGCACTgaccagtttggaggctcttttgagactgtatgtcatcaacag
 8.04 G7055471@J926776_RC@j_at.-.chr19:40004774-40004924  atggaaacccagtggccgtcggccgcaaatatctggtgtcatctgaatgtggtggtgtggtacgtgtatttgctcatgctttttctttgaatccTTTCCAATgtgacatctgctaaaatgtctcccttatgatttgcttggtgatcacag
 7.15 G7055471@J926782_RC@j_at.-.chr19:40026648-40026798  atagaagttgtgtccgtaagtccctttgacagtgatctttaatgtctcttccttgttcaccgatgccttcctccttagttgcttatgtggccattttccgttaagctggaccagatgattcactgcctgtttTATGCAATttcatggcag
 6.49 G7055471@J926807_RC@j_at.-.chr19:40101047-40101197  atttttaaggactgcatccacggctctcttcattgttcttgtggcgtaggcagtttcctcctattgtccccacacagttcctcgacttgcctgagcggctcccaaatgttgtttctggatgcaccgtttaccctcttgtgTTTCCAACag
 6.98 G7022373@J930882@j_at.+.chr3:33935929-33936079      ttgcttttgttcggaggtgggtacccagcgtaaaattttgaaattgggtgacccaccactagtttactttaatagtgaaattattctttatccataatagaacttagaaatatTTTTCAACacctgtaatttttttctcatctttaacag
 3.46 G7100883@J934567@j_at.+.chr4:136915386-136915536    cactgccaactgtggttgtggtgtgcagtcaGTTCCAGTgtcgtggtggccttctcctgtctctgcctttgcccacggctgccaggttcttgttcggcattgctgttgctctcttgctgtggcttcaccctctctgaacactctctgtag
 9.42 G7102920@J935010_RC@j_at.-.chr4:143261858-143262008 catggccaggatctgtccctctcctccttgtttgtttgtccctgtgctggctcctttccgtctctgcttggcaggggttggattcttatcatggctccaagagtctgctgtgccctttaccctctgtactctttcGTTTCAATttctcag
 6.41 G7243480@J936482@j_at.+.chr5:92070155-92070305      gcttggcagtctgagtttagtacacagaaaaaaagctttttggtaaacaaacttcacatttaatgaaaacacacacattcaagggggcggtTTTTCAGTctggataaactatataatgcagtaactcagaatctctttatgttgtaaaag
 7.30 G7194535@J938668@j_at.+.chr6:50553863-50554013      taatttacaggcattataacaattacttagggaggaagttgctttaccaatgagtgaagtgatacaatgagccagtaggttacttagattttgttaagttataagttaaaactctggctttattTATGCAATtgaaaaatatatttttag
 3.95 G7224708@J948118@j_at.+.chr9:119301624-119301774    tatagatagatttagttatatatctaaaaagagctccaaaGTTTCATTtcagtactatgaaatataccaaacaccttgctttttatttttaaaacaactctgactcctttagttcctgatcttttttataaacttttcttttccttatag
6.2920 @ 68.53 sd 39.30 TGGCTTCC
	a  0.003 0.003 0.168 0.003 0.081 0.086 0.003 0.168 
	c  0.336 0.003 0.169 0.908 0.003 0.334 0.831 0.744 
	g  0.003 0.990 0.577 0.086 0.003 0.164 0.003 0.003 
	t  0.658 0.003 0.086 0.003 0.913 0.417 0.162 0.085 
 7.79 G6833180@J909217_RC@j_at.-.chr1:172513889-172514039 tagactaggctggcttcaaactcatgaaCGCCTTCCccagtgctaaggttaaccgtgtatactcccacgccggccagcctttgggtgagatttttaagagctcttttctgcagacttgggtttacactgttgccacccccatttctgcag
 8.76 G6849168@J911119_RC@j_at.-.chr10:91329316-91329466  gaactcatctttctacctagttgtggctggtggctaaagctgcatactagtgatagtactataccaaaaggaaatagtttttttttttccttcccctCGACTTCCttagtctctgaagaaataattgatcttttttcttcaatcaaacag
 7.24 G6995328@J926515@j_at.+.chr19:26965931-26966081     gctggcgaaggatctgccTGGCTTCCactacccagtgtgcctgtgtacctgaccactgagccccaggtgttgcacttccaggcagcacgggagcagcaactttgcactgaccagtttggaggctcttttgagactgtatgtcatcaacag
 5.10 G7055471@J926776_RC@j_at.-.chr19:40004774-40004924  atggaaacccagtggccgtcggccgcaaatatctggtgtcatctgaatgtggtggtgtggtacgtgtatttgctcatgctttttctttgaatcctttccaatgtgacatctgctaaaaTGTCTCCCttatgatttgcttggtgatcacag
 7.31 G7055471@J926782_RC@j_at.-.chr19:40026648-40026798  atagaagttgtgtccgtaagtccctttgacagtgatctttaatgtctcttccttgttcaccgaTGCCTTCCtccttagttgcttatgtggccattttccgttaagctggaccagatgattcactgcctgttttatgcaatttcatggcag
 8.98 G7055471@J926807_RC@j_at.-.chr19:40101047-40101197  atttttaaggactgcatccacggctctcttcattgttcttgtggcgtaggcagtttcctcctattgtccccacacagttcctcgacttgcctgagCGGCTCCCaaatgttgtttctggatgcaccgtttaccctcttgtgtttccaacag
 4.66 G7022373@J930882@j_at.+.chr3:33935929-33936079      ttgcttttgttcggaggTGGGTACCcagcgtaaaattttgaaattgggtgacccaccactagtttactttaatagtgaaattattctttatccataatagaacttagaaatatttttcaacacctgtaatttttttctcatctttaacag
 8.57 G7100883@J934567@j_at.+.chr4:136915386-136915536    cactgccaactgtggttgtggtgtgcagtcagttccagtgtcgtggtggccttctcctgtctctgcctttgcccaCGGCTGCCaggttcttgttcggcattgctgttgctctcttgctgtggcttcaccctctctgaacactctctgtag
 6.64 G7102920@J935010_RC@j_at.-.chr4:143261858-143262008 catggccaggatctgtccctctcctccttgtttgtttgtccctgtgctggctcctttccgtctctgcttggcaggggttggattcttatcaTGGCTCCAagagtctgctgtgccctttaccctctgtactctttcgtttcaatttctcag
 2.57 G7243480@J936482@j_at.+.chr5:92070155-92070305      gctTGGCAGTCtgagtttagtacacagaaaaaaagctttttggtaaacaaacttcacatttaatgaaaacacacacattcaagggggcggtttttcagtctggataaactatataatgcagtaactcagaatctctttatgttgtaaaag
 4.00 G7194535@J938668@j_at.+.chr6:50553863-50554013      taatttacaggcattataacaattacttagggaggaagttgctttaccaatgagtgaagtgatacaatgagccagtaggttacttagattttgttaagttataagttaaaactcTGGCTTTAtttatgcaattgaaaaatatatttttag
 3.89 G7224708@J948118@j_at.+.chr9:119301624-119301774    tatagatagatttagttatatatctaaaaagagctccaaagtttcatttcagtactatgaaatataccaaacaccttgctttttatttttaaaacaactcTGACTCCTttagttcctgatcttttttataaacttttcttttccttatag
Color Coding for Profiles
6.3589 @ 50.17 sd 25.99 GGTGGCC
	a  0.003 0.003 0.003 0.003 0.168 0.003 0.003 
	c  0.081 0.329 0.169 0.003 0.003 0.990 0.417 
	g  0.748 0.581 0.086 0.831 0.825 0.003 0.252 
	t  0.169 0.086 0.742 0.163 0.003 0.003 0.328 
6.6166 @ 71.49 sd 29.08 TTTACCCA
	a  0.085 0.249 0.167 0.825 0.003 0.003 0.332 0.662 
	c  0.003 0.085 0.086 0.003 0.908 0.827 0.496 0.003 
	g  0.003 0.003 0.003 0.168 0.003 0.003 0.168 0.003 
	t  0.909 0.663 0.744 0.003 0.086 0.166 0.003 0.332 
6.5325 @ 104.86 sd 34.48 TTTTCAAT
	a  0.003 0.169 0.003 0.086 0.003 0.990 0.581 0.003 
	c  0.003 0.086 0.003 0.249 0.990 0.003 0.168 0.168 
	g  0.247 0.003 0.003 0.251 0.003 0.003 0.166 0.003 
	t  0.746 0.743 0.990 0.415 0.003 0.003 0.084 0.825 
6.2920 @ 68.53 sd 39.30 TGGCTTCC
	a  0.003 0.003 0.168 0.003 0.081 0.086 0.003 0.168 
	c  0.336 0.003 0.169 0.908 0.003 0.334 0.831 0.744 
	g  0.003 0.990 0.577 0.086 0.003 0.164 0.003 0.003 
	t  0.658 0.003 0.086 0.003 0.913 0.417 0.162 0.085 
Colored Text View of Profiles
Different colors represent different profiles. Darker colors
represent stronger matches to profile.

G6833180@J909217_RC@j_at.-.chr1:172513889-172514039 tagactaggctggcttcaaactcatgaacgccttccccagtgctaaggttaaccgtgtatactcccacgccggccagcctttgggtgagatttttaagagctcttttctgcagacttgggtttacactgttgccacccccatttctgcag
G6849168@J911119_RC@j_at.-.chr10:91329316-91329466  gaactcatctttctacctagttgtggctggtggctaaagctgcatactagtgatagtactataccaaaaggaaatagtttttttttttccttcccctcgacttccttagtctctgaagaaataattgatcttttttcttcaatcaaacag
G6995328@J926515@j_at.+.chr19:26965931-26966081     gctggcgaaggatctgcctggcttccactacccagtgtgcctgtgtacctgaccactgagccccaggtgttgcacttccaggcagcacgggagcagcaactttgcactgaccagtttggaggctcttttgagactgtatgtcatcaacag
G7055471@J926776_RC@j_at.-.chr19:40004774-40004924  atggaaacccagtggccgtcggccgcaaatatctggtgtcatctgaatgtggtggtgtggtacgtgtatttgctcatgctttttctttgaatcctttccaatgtgacatctgctaaaatgtctcccttatgatttgcttggtgatcacag
G7055471@J926782_RC@j_at.-.chr19:40026648-40026798  atagaagttgtgtccgtaagtccctttgacagtgatctttaatgtctcttccttgttcaccgatgccttcctccttagttgcttatgtggccattttccgttaagctggaccagatgattcactgcctgttttatgcaatttcatggcag
G7055471@J926807_RC@j_at.-.chr19:40101047-40101197  atttttaaggactgcatccacggctctcttcattgttcttgtggcgtaggcagtttcctcctattgtccccacacagttcctcgacttgcctgagcggctcccaaatgttgtttctggatgcaccgtttaccctcttgtgtttccaacag
G7022373@J930882@j_at.+.chr3:33935929-33936079      ttgcttttgttcggaggtgggtacccagcgtaaaattttgaaattgggtgacccaccactagtttactttaatagtgaaattattctttatccataatagaacttagaaatatttttcaacacctgtaatttttttctcatctttaacag
G7100883@J934567@j_at.+.chr4:136915386-136915536    cactgccaactgtggttgtggtgtgcagtcagttccagtgtcgtggtggccttctcctgtctctgcctttgcccacggctgccaggttcttgttcggcattgctgttgctctcttgctgtggcttcaccctctctgaacactctctgtag
G7102920@J935010_RC@j_at.-.chr4:143261858-143262008 catggccaggatctgtccctctcctccttgtttgtttgtccctgtgctggctcctttccgtctctgcttggcaggggttggattcttatcatggctccaagagtctgctgtgccctttaccctctgtactctttcgtttcaatttctcag
G7243480@J936482@j_at.+.chr5:92070155-92070305      gcttggcagtctgagtttagtacacagaaaaaaagctttttggtaaacaaacttcacatttaatgaaaacacacacattcaagggggcggtttttcagtctggataaactatataatgcagtaactcagaatctctttatgttgtaaaag
G7194535@J938668@j_at.+.chr6:50553863-50554013      taatttacaggcattataacaattacttagggaggaagttgctttaccaatgagtgaagtgatacaatgagccagtaggttacttagattttgttaagttataagttaaaactctggctttatttatgcaattgaaaaatatatttttag
G7224708@J948118@j_at.+.chr9:119301624-119301774    tatagatagatttagttatatatctaaaaagagctccaaagtttcatttcagtactatgaaatataccaaacaccttgctttttatttttaaaacaactctgactcctttagttcctgatcttttttataaacttttcttttccttatag
Graphical Summary of Profile Hits
Colors represent different profiles. Darker colors represent
stronger matches to profile.