Improbizer Results

Improbizer will display the results in parts. First it will display the profiles (consensus sequences with the probability of each base at each position) individually as they are calculated. The position of a profile in a sequence is indicated by upper case. The strength of the profile match is indicated by the score on the left. There will be a delay during this phase as each profile is calculated. Second Improbizer will display all profiles at once over each sequence. Each profile has it's own color and the stronger the profile matches the darker it will appear in the sequence. Finally there will be a graphic summary of all the profiles at the end, using the same color conventions.

Looking for 4 motifs in 12 sequences. Longest sequence is 150 bases.

Settings are use location; don't include reverse complement; 1 occurrences per sequence; right align; restrain expansionist tendencies 6.000000; number of sequences in initial scan 1000; background model m2; background data fa/mm2.control.gold.down.fa;

7.1820 @ 7.66 sd 14.38 GTAAGAT
	a  0.003 0.003 0.662 0.497 0.003 0.662 0.415 
	c  0.003 0.003 0.250 0.086 0.003 0.003 0.003 
	g  0.990 0.003 0.003 0.003 0.990 0.250 0.086 
	t  0.003 0.990 0.085 0.414 0.003 0.085 0.496 
 6.55 G6833180@J909217_RC@j_at.-.chr1:172513681-172513831 GTATGAGacctttttattatatagcaagatgtttaagacaaggggtttgggattctgtatgggagcaaaaaccaaacacttcctgttcagcatagactgtgtcctggcctctgggccggagtttcttggacatcataatgtcctctggac
 5.41 G6849168@J911119_RC@j_at.-.chr10:91329041-91329191  gtttgtgttgcatgctggactaaaacgttctgttgaaacgtgagttGTAAGATatagactgctactaacaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
 8.30 G6995328@J926515@j_at.+.chr19:26966204-26966354     GTAAGAAgaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggatgctaacttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
 8.81 G7055471@J926776_RC@j_at.-.chr19:40004564-40004714  GTAAGATgcctgttgaataagactgtggctttcctaaagagcacccttactgactgcagcgtgtagaccagagtaacccctggtaaacatccggctgtggtttgcaaagagcccacaaccaacagatatggtagagccagggattcggcc
 5.12 G7055471@J926782_RC@j_at.-.chr19:40026330-40026480  GTCTGTTttggtcaccgccaaccgctgcttgacccaaagcaatatttgcctttctttggcattgccctctgtaggccaatttagttctccaaacagcacctgtcatcctggctttcttagccttgctttggctcttttgtggctggtgaa
 7.18 G7055471@J926807_RC@j_at.-.chr19:40100807-40100957  gtatctctctttggggctgtttcttttaattGTCCGATcatgcatggtttctttccttctttgctcctaacaccatactgtgagccctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
 7.41 G7022373@J930882@j_at.+.chr3:33936171-33936321      GTAAGGAgaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttattttttacttaattgctgtatggtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
 6.91 G7100883@J934567@j_at.+.chr4:136915649-136915799    gtatcctGTCTGAAgggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgccactaacctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccacgtagtgtgaacgcgtgtgtggt
 7.41 G7102920@J935010_RC@j_at.-.chr4:143261625-143261775 GTAAGGAggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccactaatagcctgggtcaacgcaaagctcctgatgggcttcgagggctgtactggg
 8.30 G7243480@J936482@j_at.+.chr5:92070335-92070485      GTAAGAAatacctccttttctttgaagaatgctctgaaatataaaactgtcaagctaattctttttttcattaaaaggtgatgttgcatgcatttgaggcatcctaactgttataacattctgacacgtgtgtggatgtgatcagggcat
 8.84 G7194535@J938668@j_at.+.chr6:50554055-50554205      GTATGATaccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcaactaaatttaccttgattaaactttatcaccttgagttgtacattgcctgagccttgagctgcatgccaaactcaagttagctacctgtcaca
 5.94 G7224708@J948118@j_at.+.chr9:119301821-119301971    gttggttgGTTTGGTttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagccctggctgtcctggaacaattgatactcgtttgccgcctccctcccttcccctcac
6.8069 @ 71.40 sd 14.72 TACTAAC
	a  0.170 0.419 0.003 0.253 0.753 0.919 0.169 
	c  0.157 0.407 0.990 0.003 0.003 0.003 0.824 
	g  0.003 0.170 0.003 0.003 0.157 0.074 0.003 
	t  0.670 0.003 0.003 0.740 0.086 0.003 0.003 
 6.89 G6833180@J909217_RC@j_at.-.chr1:172513681-172513831 gtatgagacctttttattatatagcaagatgtttaagacaaggggtttgggattctgtatgggagcaaaaACCAAACacttcctgttcagcatagactgtgtcctggcctctgggccggagtttcttggacatcataatgtcctctggac
 9.66 G6849168@J911119_RC@j_at.-.chr10:91329041-91329191  gtttgtgttgcatgctggactaaaacgttctgttgaaacgtgagttgtaagatatagactgcTACTAACaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
 8.62 G6995328@J926515@j_at.+.chr19:26966204-26966354     gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggaTGCTAACttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
 6.28 G7055471@J926776_RC@j_at.-.chr19:40004564-40004714  gtaagatgcctgttgaataagactgtggctttcctaaagagcaccctTACTGACtgcagcgtgtagaccagagtaacccctggtaaacatccggctgtggtttgcaaagagcccacaaccaacagatatggtagagccagggattcggcc
 6.99 G7055471@J926782_RC@j_at.-.chr19:40026330-40026480  gtctgttttggtcaccgccaaccgctgcttgacccaaagcaatatttgcctttctttggcattgccctctgtaggccaatttagttcTCCAAACagcacctgtcatcctggctttcttagccttgctttggctcttttgtggctggtgaa
 8.67 G7055471@J926807_RC@j_at.-.chr19:40100807-40100957  gtatctctctttggggctgtttcttttaattgtccgatcatgcatggtttctttccttctttgcTCCTAACaccatactgtgagccctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
 5.00 G7022373@J930882@j_at.+.chr3:33936171-33936321      gtaaggagaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttatttttTACTTAAttgctgtatggtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
 7.71 G7100883@J934567@j_at.+.chr4:136915649-136915799    gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgcCACTAACctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccacgtagtgtgaacgcgtgtgtggt
 6.91 G7102920@J935010_RC@j_at.-.chr4:143261625-143261775 gtaaggaggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgTGCAAACacctaatactcctccactaatagcctgggtcaacgcaaagctcctgatgggcttcgagggctgtactggg
 7.44 G7243480@J936482@j_at.+.chr5:92070335-92070485      gtaagaaatacctccttttctttgaagaatgctctgaaatataaaactgtcaagctaattctttttttcattaaaaggtgatgttgcatgcatttgaggcaTCCTAACtgttataacattctgacacgtgtgtggatgtgatcagggcat
 5.80 G7194535@J938668@j_at.+.chr6:50554055-50554205      gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcAACTAAAtttaccttgattaaactttatcaccttgagttgtacattgcctgagccttgagctgcatgccaaactcaagttagctacctgtcaca
 1.72 G7224708@J948118@j_at.+.chr9:119301821-119301971    gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagCCCTGGCtgtcctggaacaattgatactcgtttgccgcctccctcccttcccctcac
6.5334 @ 114.77 sd 15.03 ATCCTTG
	a  0.910 0.003 0.333 0.003 0.003 0.086 0.003 
	c  0.003 0.168 0.497 0.908 0.003 0.169 0.084 
	g  0.003 0.251 0.086 0.003 0.332 0.167 0.909 
	t  0.084 0.578 0.084 0.085 0.661 0.579 0.003 
 3.65 G6833180@J909217_RC@j_at.-.chr1:172513681-172513831 gtatgagacctttttattatatagcaagatgtttaagacaaggggtttgggattctgtatgggagcaaaaaccaaacacttcctgttcagcatagactgtgtcctggcctctgggccggagTTTCTTGgacatcataatgtcctctggac
 7.18 G6849168@J911119_RC@j_at.-.chr10:91329041-91329191  gtttgtgttgcatgctggactaaaacgttctgttgaaacgtgagttgtaagatatagactgctactaacaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaATACGAGtccatattaaaatgcacggtgtgtct
 5.12 G6995328@J926515@j_at.+.chr19:26966204-26966354     gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggatgctaacttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaATATTTGtccttcctaacc
 3.96 G7055471@J926776_RC@j_at.-.chr19:40004564-40004714  gtaagatgcctgttgaataagactgtggctttcctaaagagcacccttactgactgcagcgtgtagaccagagtaacccctggtaaacATCCGGCtgtggtttgcaaagagcccacaaccaacagatatggtagagccagggattcggcc
 7.71 G7055471@J926782_RC@j_at.-.chr19:40026330-40026480  gtctgttttggtcaccgccaaccgctgcttgacccaaagcaatatttgcctttctttggcattgccctctgtaggccaatttagttctccaaacagcacctgtcatcctggctttcttAGCCTTGctttggctcttttgtggctggtgaa
 7.36 G7055471@J926807_RC@j_at.-.chr19:40100807-40100957  gtatctctctttggggctgtttcttttaattgtccgatcatgcatggtttctttccttctttgctcctaacaccatactgtgagccctaATCCTCGcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
 8.08 G7022373@J930882@j_at.+.chr3:33936171-33936321      gtaaggagaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttattttttacttaattgctgtatggtcagttgtttcccttaagagatgatatttaaagaagATCCTTGtttctatcccaggc
 6.50 G7100883@J934567@j_at.+.chr4:136915649-136915799    gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgccactaacctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccacgtagtgtgaACGCGTGtgtggt
 5.61 G7102920@J935010_RC@j_at.-.chr4:143261625-143261775 gtaaggaggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccactaatAGCCTGGgtcaacgcaaagctcctgatgggcttcgagggctgtactggg
 7.06 G7243480@J936482@j_at.+.chr5:92070335-92070485      gtaagaaatacctccttttctttgaagaatgctctgaaatataaaactgtcaagctaattctttttttcattaaaaggtgatgttgcatgcatttgaggcatcctaactgttataacattctgACACGTGtgtggatgtgatcagggcat
 7.04 G7194535@J938668@j_at.+.chr6:50554055-50554205      gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcaactaaatttaccttgattaaactttatcaccttgagttgtacattgcctgAGCCTTGagctgcatgccaaactcaagttagctacctgtcaca
 9.14 G7224708@J948118@j_at.+.chr9:119301821-119301971    gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagccctggctgtcctggaacaattgATACTCGtttgccgcctccctcccttcccctcac
5.9934 @ 69.83 sd 33.74 TGCATGC
	a  0.003 0.003 0.003 0.909 0.003 0.085 0.003 
	c  0.085 0.085 0.743 0.085 0.003 0.167 0.579 
	g  0.085 0.908 0.003 0.003 0.414 0.745 0.415 
	t  0.826 0.003 0.250 0.003 0.580 0.003 0.003 
 5.51 G6833180@J909217_RC@j_at.-.chr1:172513681-172513831 gtatgagacctttttattatatagcaagatgtttaagacaaggggtttgggattcTGTATGGgagcaaaaaccaaacacttcctgttcagcatagactgtgtcctggcctctgggccggagtttcttggacatcataatgtcctctggac
 6.84 G6849168@J911119_RC@j_at.-.chr10:91329041-91329191  gtttgtgtTGCATGCtggactaaaacgttctgttgaaacgtgagttgtaagatatagactgctactaacaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
 5.00 G6995328@J926515@j_at.+.chr19:26966204-26966354     gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaGGCAGGCaagggatgctaacttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
 6.75 G7055471@J926776_RC@j_at.-.chr19:40004564-40004714  gtaagatgcctgttgaataagactgtggctttcctaaagagcacccttactgacTGCAGCGtgtagaccagagtaacccctggtaaacatccggctgtggtttgcaaagagcccacaaccaacagatatggtagagccagggattcggcc
 6.05 G7055471@J926782_RC@j_at.-.chr19:40026330-40026480  gtctgttttggtcaccgccaaccgctgcttgacccaaagcaatatttgcctttctttggcattgccctcTGTAGGCcaatttagttctccaaacagcacctgtcatcctggctttcttagccttgctttggctcttttgtggctggtgaa
 7.19 G7055471@J926807_RC@j_at.-.chr19:40100807-40100957  gtatctctctttggggctgtttcttttaattgtccgatcaTGCATGGtttctttccttctttgctcctaacaccatactgtgagccctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
 5.58 G7022373@J930882@j_at.+.chr3:33936171-33936321      gtaaggagaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttattttttacttaattgcTGTATGGtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
 4.62 G7100883@J934567@j_at.+.chr4:136915649-136915799    gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgccactaacctgtgtctgctcacagctgctgggcagccacattaaCGCATAGtctcagccccacgtagtgtgaacgcgtgtgtggt
 5.14 G7102920@J935010_RC@j_at.-.chr4:143261625-143261775 gtaaggaggtggtgtggattcagggagccacacctgagaTCCAGGCaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccactaatagcctgggtcaacgcaaagctcctgatgggcttcgagggctgtactggg
 8.43 G7243480@J936482@j_at.+.chr5:92070335-92070485      gtaagaaatacctccttttctttgaagaatgctctgaaatataaaactgtcaagctaattctttttttcattaaaaggtgatgtTGCATGCatttgaggcatcctaactgttataacattctgacacgtgtgtggatgtgatcagggcat
 6.76 G7194535@J938668@j_at.+.chr6:50554055-50554205      gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcaactaaatttaccttgattaaactttatcaccttgagttgtacattgcctgagccttgagcTGCATGCcaaactcaagttagctacctgtcaca
 4.05 G7224708@J948118@j_at.+.chr9:119301821-119301971    gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagccctggctgtcctggaacaattgatactcgttTGCCGCCtccctcccttcccctcac
Color Coding for Profiles
7.1820 @ 7.66 sd 14.38 GTAAGAT
	a  0.003 0.003 0.662 0.497 0.003 0.662 0.415 
	c  0.003 0.003 0.250 0.086 0.003 0.003 0.003 
	g  0.990 0.003 0.003 0.003 0.990 0.250 0.086 
	t  0.003 0.990 0.085 0.414 0.003 0.085 0.496 
6.8069 @ 71.40 sd 14.72 TACTAAC
	a  0.170 0.419 0.003 0.253 0.753 0.919 0.169 
	c  0.157 0.407 0.990 0.003 0.003 0.003 0.824 
	g  0.003 0.170 0.003 0.003 0.157 0.074 0.003 
	t  0.670 0.003 0.003 0.740 0.086 0.003 0.003 
6.5334 @ 114.77 sd 15.03 ATCCTTG
	a  0.910 0.003 0.333 0.003 0.003 0.086 0.003 
	c  0.003 0.168 0.497 0.908 0.003 0.169 0.084 
	g  0.003 0.251 0.086 0.003 0.332 0.167 0.909 
	t  0.084 0.578 0.084 0.085 0.661 0.579 0.003 
5.9934 @ 69.83 sd 33.74 TGCATGC
	a  0.003 0.003 0.003 0.909 0.003 0.085 0.003 
	c  0.085 0.085 0.743 0.085 0.003 0.167 0.579 
	g  0.085 0.908 0.003 0.003 0.414 0.745 0.415 
	t  0.826 0.003 0.250 0.003 0.580 0.003 0.003 
Colored Text View of Profiles
Different colors represent different profiles. Darker colors
represent stronger matches to profile.

G6833180@J909217_RC@j_at.-.chr1:172513681-172513831 gtatgagacctttttattatatagcaagatgtttaagacaaggggtttgggattctgtatgggagcaaaaaccaaacacttcctgttcagcatagactgtgtcctggcctctgggccggagtttcttggacatcataatgtcctctggac
G6849168@J911119_RC@j_at.-.chr10:91329041-91329191  gtttgtgttgcatgctggactaaaacgttctgttgaaacgtgagttgtaagatatagactgctactaacaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
G6995328@J926515@j_at.+.chr19:26966204-26966354     gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggatgctaacttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
G7055471@J926776_RC@j_at.-.chr19:40004564-40004714  gtaagatgcctgttgaataagactgtggctttcctaaagagcacccttactgactgcagcgtgtagaccagagtaacccctggtaaacatccggctgtggtttgcaaagagcccacaaccaacagatatggtagagccagggattcggcc
G7055471@J926782_RC@j_at.-.chr19:40026330-40026480  gtctgttttggtcaccgccaaccgctgcttgacccaaagcaatatttgcctttctttggcattgccctctgtaggccaatttagttctccaaacagcacctgtcatcctggctttcttagccttgctttggctcttttgtggctggtgaa
G7055471@J926807_RC@j_at.-.chr19:40100807-40100957  gtatctctctttggggctgtttcttttaattgtccgatcatgcatggtttctttccttctttgctcctaacaccatactgtgagccctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
G7022373@J930882@j_at.+.chr3:33936171-33936321      gtaaggagaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttattttttacttaattgctgtatggtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
G7100883@J934567@j_at.+.chr4:136915649-136915799    gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgccactaacctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccacgtagtgtgaacgcgtgtgtggt
G7102920@J935010_RC@j_at.-.chr4:143261625-143261775 gtaaggaggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccactaatagcctgggtcaacgcaaagctcctgatgggcttcgagggctgtactggg
G7243480@J936482@j_at.+.chr5:92070335-92070485      gtaagaaatacctccttttctttgaagaatgctctgaaatataaaactgtcaagctaattctttttttcattaaaaggtgatgttgcatgcatttgaggcatcctaactgttataacattctgacacgtgtgtggatgtgatcagggcat
G7194535@J938668@j_at.+.chr6:50554055-50554205      gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcaactaaatttaccttgattaaactttatcaccttgagttgtacattgcctgagccttgagctgcatgccaaactcaagttagctacctgtcaca
G7224708@J948118@j_at.+.chr9:119301821-119301971    gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagccctggctgtcctggaacaattgatactcgtttgccgcctccctcccttcccctcac
Graphical Summary of Profile Hits
Colors represent different profiles. Darker colors represent
stronger matches to profile.