Loading splices from /cluster/home/sugnet/jk/hg/altSplice/affySplice/mm2.splices
Loading beds.
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Reading Data Matrixes.
Filling in event data.
Doing analysis
+----------------------+-------+-----------+-----------+------+---------+
| Alt Event.           | Count | w/ Probes | Expressed | Alt. | Percent |
+----------------------+-------+-----------+-----------+------+---------+
| alt 5'               |   933 |       427 |       206 |   62 |   30.1% |
| alt 3'               |  1788 |       608 |       276 |   73 |   26.4% |
| alt Cass             |  3259 |      2151 |      1070 |  322 |   30.1% |
| alt Ret. Int.        |   503 |        18 |        13 |    0 |    0.0% |
| alt Mutual Exclusive |   791 |       362 |       185 |   50 |   27.0% |
| alt Txn Start        |  5012 |       427 |       801 |  216 |   27.0% |
| alt Txn End          |  4267 |       608 |       375 |   92 |   24.5% |
| alt Other            | 11844 |      4013 |      1943 |  705 |   36.3% |
| alt Control          | 32500 |         0 |         0 |    0 |    0.0% |
+----------------------+-------+-----------+-----------+------+---------+
Cassette binding sites in 322 exons:
+----------+-------------+-------------+--------------+---------------+
| Position |     Nova-1 |        Fox-1 |     PTB/nPTB |     hnRNP-H/F |
+----------+------------+--------------+--------------+---------------+
| UpStream |   0 (  0%) |    70 ( 22%) |   144 ( 45%) |    292 ( 91%) |
| DnStream |   0 (  0%) |   101 ( 31%) |    56 ( 17%) |    395 (123%) |
+----------+------------+--------------+--------------+---------------+
Control binding sites in 94384 exons:
+----------+-------------+-------------+--------------+---------------+
| Position |     Nova-1 |        Fox-1 |     PTB/nPTB |     hnRNP-H/F |
+----------+------------+--------------+--------------+---------------+
| UpStream |   2 (  0%) | 18208 ( 19%) | 24160 ( 26%) |  95481 (101%) |
| DnStream |   3 (  0%) | 20459 ( 22%) | 19114 ( 20%) | 116501 (123%) |
+----------+------------+--------------+--------------+---------------+
37 liver Specific Events. 37 liver Specific paths
+----------+---------+-------+-------+-------+-------+
| Cassette | MutExcl | Alt3' | Alt5' | TxEnd | Other |
+----------+---------+-------+-------+-------+-------+
|        7 |       2 |     1 |     3 |     0 |    24 |
+----------+---------+-------+-------+-------+-------+
Cassette binding sites:
+----------+-------------+-------------+--------------+---------------+
| Position |     Nova-1 |        Fox-1 |     PTB/nPTB |     hnRNP-H/F |
+----------+------------+--------------+--------------+---------------+
| UpStream |   0 (  0%) |     3 ( 43%) |     1 ( 14%) |      7 (100%) |
| DnStream |   0 (  0%) |     1 ( 14%) |     1 ( 14%) |     13 (186%) |
+----------+------------+--------------+--------------+---------------+