fitVsDatCorrelation=0.888076710632004 cont.fitVsDatCorrelation=0.277237441122321 fstatistic=4064.23253194765,59,853 cont.fstatistic=919.21263783868,59,853 residuals=-0.89892364894116,-0.120677984248857,0.00483282803378552,0.120504549192733,1.44081930154705 cont.residuals=-0.885366725661717,-0.320648055686866,-0.145112718317168,0.136726357050454,2.52783613007358 predictedValues: Include Exclude Both Lung 61.2098682447332 46.718863338436 73.0646052559404 cerebhem 56.6163380382661 44.1833882293504 60.770983699125 cortex 63.9005603491441 42.8437203122919 72.317420935714 heart 69.576765425212 47.9474784992037 81.5575820511574 kidney 162.705689856153 62.3823354806528 218.484437835319 liver 62.4229507560842 47.5497441835536 69.2118307875787 stomach 58.7166249153345 46.1818810868281 66.0023957182797 testicle 60.5311084901161 46.9907195302993 66.1949281733712 diffExp=14.4910049062972,12.4329498089157,21.0568400368523,21.6292869260082,100.323354375501,14.8732065725306,12.5347438285064,13.5403889598168 diffExpScore=0.995280386913674 diffExp1.5=0,0,0,0,1,0,0,0 diffExp1.5Score=0.5 diffExp1.4=0,0,1,1,1,0,0,0 diffExp1.4Score=0.75 diffExp1.3=1,0,1,1,1,1,0,0 diffExp1.3Score=0.833333333333333 diffExp1.2=1,1,1,1,1,1,1,1 diffExp1.2Score=0.888888888888889 cont.predictedValues: Include Exclude Both Lung 67.3671687796778 84.8946214219834 59.6244366069853 cerebhem 69.1217085710812 92.8968695523618 59.0071491852791 cortex 71.2902794422117 63.6213881359358 66.7988216948564 heart 61.1445280604144 55.7109397095268 65.8740535994937 kidney 72.0358055064447 57.2346535903897 56.2312601751808 liver 64.6392398381908 58.3821086122099 65.3758570001444 stomach 58.5073219268289 73.2007064509549 72.3951227896431 testicle 63.7325093163961 74.5870158788322 66.7174959722144 cont.diffExp=-17.5274526423056,-23.7751609812806,7.66889130627583,5.43358835088766,14.8011519160550,6.2571312259809,-14.6933845241261,-10.8545065624361 cont.diffExpScore=2.99827964774403 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,-1,0,0,0,0,0,0 cont.diffExp1.3Score=0.5 cont.diffExp1.2=-1,-1,0,0,1,0,-1,0 cont.diffExp1.2Score=1.33333333333333 tran.correlation=0.963331841064001 cont.tran.correlation=0.0687454509996482 tran.covariance=0.0376346749049734 cont.tran.covariance=0.000763078324565855 tran.mean=61.2798772959787 cont.tran.mean=68.02292904959 weightedLogRatios: wLogRatio Lung 1.0750299395727 cerebhem 0.970055520816487 cortex 1.58206345808605 heart 1.51024799025975 kidney 4.42193101563310 liver 1.08804254201403 stomach 0.949172316694146 testicle 1.00689243408775 cont.weightedLogRatios: wLogRatio Lung -1.00035037322518 cerebhem -1.29590814775799 cortex 0.479124757242842 heart 0.378463514861245 kidney 0.957312723010332 liver 0.419253922817797 stomach -0.936806271299612 testicle -0.665782930421674 varWeightedLogRatios=1.38238848480497 cont.varWeightedLogRatios=0.731366870965942 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.20163260504761 0.120225643546432 34.9478903261176 8.91514684846e-167 *** df.mm.trans1 0.0823264080242393 0.103450863985302 0.795802034441546 0.426368508256153 df.mm.trans2 -0.390091256523807 0.091416648880417 -4.26717957069383 2.20134125659604e-05 *** df.mm.exp2 0.0504216766618849 0.117224338045796 0.430129762321086 0.667209894764575 df.mm.exp3 -0.0332902173470918 0.117224338045796 -0.283987249593906 0.77648907011899 df.mm.exp4 0.0441152183297536 0.117224338045796 0.376331562755502 0.706764001084124 df.mm.exp5 0.171397967772673 0.117224338045796 1.46213636715708 0.144072154030705 df.mm.exp6 0.0914252261389142 0.117224338045796 0.779916761851939 0.435656217688485 df.mm.exp7 0.0485070237464061 0.117224338045796 0.413796525150399 0.6791271459839 df.mm.exp8 0.0933913238296533 0.117224338045796 0.796688856482756 0.425853438296722 df.mm.trans1:exp2 -0.128432497535076 0.107691571221132 -1.19259563286857 0.233359417275143 df.mm.trans2:exp2 -0.106220799131226 0.0789765611848145 -1.34496612080458 0.178993653336919 df.mm.trans1:exp3 0.0763099255007737 0.107691571221132 0.708597011219015 0.47876819043443 df.mm.trans2:exp3 -0.0532987078156201 0.0789765611848145 -0.6748674165604 0.499942877852439 df.mm.trans1:exp4 0.0840070408308766 0.107691571221132 0.780070713782958 0.435565648614794 df.mm.trans2:exp4 -0.0181570134220484 0.0789765611848145 -0.229903823991005 0.818221623933078 df.mm.trans1:exp5 0.8062365949499 0.107691571221132 7.48653386525849 1.76353117307617e-13 *** df.mm.trans2:exp5 0.117736173285237 0.0789765611848145 1.49077361078967 0.136390625646529 df.mm.trans1:exp6 -0.071800640155854 0.107691571221132 -0.666724789523406 0.50512823559448 df.mm.trans2:exp6 -0.073796826103613 0.0789765611848145 -0.934414274267015 0.350354672648795 df.mm.trans1:exp7 -0.0900925410404792 0.107691571221132 -0.836579316458155 0.403063373338106 df.mm.trans2:exp7 -0.060067495846195 0.0789765611848145 -0.760573706237094 0.447121910362646 df.mm.trans1:exp8 -0.104542323372464 0.107691571221132 -0.970756784277932 0.331944586667236 df.mm.trans2:exp8 -0.087589207414229 0.0789765611848145 -1.10905319376036 0.267719816082487 df.mm.trans1:probe2 0.707731273036683 0.0750212380614465 9.43374558091153 3.64640370275572e-20 *** df.mm.trans1:probe3 0.119048065983271 0.0750212380614465 1.58685818922056 0.112915365151151 df.mm.trans1:probe4 -0.261132974330357 0.0750212380614465 -3.48078732207104 0.000525311710366146 *** df.mm.trans1:probe5 -0.203586567897572 0.0750212380614465 -2.71371911685626 0.00678745743550044 ** df.mm.trans1:probe6 -0.320190836150454 0.0750212380614465 -4.26800256066423 2.19340730699690e-05 *** df.mm.trans1:probe7 -0.461316595427579 0.0750212380614465 -6.14914665963971 1.19573635355425e-09 *** df.mm.trans1:probe8 -0.360497765024305 0.0750212380614465 -4.80527613699253 1.82560327474612e-06 *** df.mm.trans1:probe9 -0.325917676888069 0.0750212380614465 -4.34433882071 1.56504784515313e-05 *** df.mm.trans1:probe10 -0.517285532467689 0.0750212380614465 -6.8951878939135 1.04676737852729e-11 *** df.mm.trans1:probe11 -0.443842721573497 0.0750212380614465 -5.91622763156701 4.76612034661979e-09 *** df.mm.trans1:probe12 -0.160490315668445 0.0750212380614465 -2.13926509099990 0.0326974912741634 * df.mm.trans1:probe13 -0.190848193506896 0.0750212380614465 -2.54392220707662 0.0111369125667166 * df.mm.trans1:probe14 0.188333424794276 0.0750212380614465 2.51040144978707 0.0122434344874827 * df.mm.trans1:probe15 -0.113049308897833 0.0750212380614465 -1.50689740424224 0.132207190947386 df.mm.trans1:probe16 -0.494762992651306 0.0750212380614465 -6.5949723763032 7.45285142829535e-11 *** df.mm.trans1:probe17 -0.548426773930607 0.0750212380614465 -7.3102869014427 6.1362639168912e-13 *** df.mm.trans1:probe18 -0.526790398297403 0.0750212380614465 -7.02188356137142 4.47045295222923e-12 *** df.mm.trans1:probe19 -0.496503968130459 0.0750212380614465 -6.61817881122936 6.42083317493635e-11 *** df.mm.trans1:probe20 -0.532676924623301 0.0750212380614465 -7.10034835984724 2.62202106979809e-12 *** df.mm.trans1:probe21 -0.486612121494147 0.0750212380614465 -6.486324860376 1.48857287360215e-10 *** df.mm.trans2:probe2 0.0181743783316154 0.0750212380614465 0.242256443658389 0.808639693847095 df.mm.trans2:probe3 0.096080333731337 0.0750212380614465 1.28070845288693 0.200644200429388 df.mm.trans2:probe4 0.0619144567221325 0.0750212380614465 0.825292388155753 0.409436352787651 df.mm.trans2:probe5 0.129392972079490 0.0750212380614465 1.72475122276055 0.0849345601327465 . df.mm.trans2:probe6 0.248751087151402 0.0750212380614465 3.31574222952254 0.000952598536938708 *** df.mm.trans3:probe2 0.0213128319166973 0.0750212380614465 0.284090645094939 0.776409860909719 df.mm.trans3:probe3 0.242421880554016 0.0750212380614465 3.23137669836185 0.00127918263447009 ** df.mm.trans3:probe4 -0.117949609180384 0.0750212380614465 -1.57221624473562 0.116271234352080 df.mm.trans3:probe5 1.24320608216651 0.0750212380614465 16.5713885066553 1.11001178415083e-53 *** df.mm.trans3:probe6 0.316512631889827 0.0750212380614465 4.21897372088935 2.71692234332432e-05 *** df.mm.trans3:probe7 0.0202102107240101 0.0750212380614465 0.269393191131514 0.787692275802956 df.mm.trans3:probe8 1.09928550862933 0.0750212380614465 14.652990766814 1.57414417831296e-43 *** df.mm.trans3:probe9 0.209707249491543 0.0750212380614465 2.79530510173375 0.00530151367509828 ** df.mm.trans3:probe10 0.511432022608866 0.0750212380614465 6.81716319037517 1.75604466539864e-11 *** df.mm.trans3:probe11 0.82610045513808 0.0750212380614465 11.0115545475464 1.84641412395085e-26 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.55573478251499 0.251281608879198 18.1299968701853 2.18179910277098e-62 *** df.mm.trans1 -0.329455790127817 0.216220922386914 -1.52369986442975 0.127954340407536 df.mm.trans2 -0.132625702379092 0.191068410460571 -0.694126789768111 0.487791691128703 df.mm.exp2 0.126197153881539 0.245008630397311 0.515072280012729 0.60663595771849 df.mm.exp3 -0.3454787792267 0.245008630397311 -1.41006779502610 0.158884185250416 df.mm.exp4 -0.617830762447781 0.245008630397311 -2.52166938546570 0.0118610475094407 * df.mm.exp5 -0.268653020401354 0.245008630397311 -1.09650431483046 0.273167598029556 df.mm.exp6 -0.507824921870453 0.245008630397311 -2.07268177062560 0.0385017398897905 * df.mm.exp7 -0.483284981214187 0.245008630397311 -1.97252227576834 0.0488726120660761 * df.mm.exp8 -0.29730903035827 0.245008630397311 -1.21346350075974 0.225288559372463 df.mm.trans1:exp2 -0.100486099928726 0.225084353727944 -0.446437516710658 0.655394547670425 df.mm.trans2:exp2 -0.0361179449804682 0.165067591013578 -0.218807003595862 0.826852731760364 df.mm.trans1:exp3 0.402080974996123 0.225084353727944 1.78635684060969 0.0743965806873668 . df.mm.trans2:exp3 0.0570177450946316 0.165067591013578 0.345420592525286 0.729863361537164 df.mm.trans1:exp4 0.520913347543951 0.225084353727944 2.31430278878279 0.0208878529842116 * df.mm.trans2:exp4 0.196596554826641 0.165067591013578 1.19100638483583 0.233982385668014 df.mm.trans1:exp5 0.335658525358213 0.225084353727944 1.4912565880253 0.136263843954420 df.mm.trans2:exp5 -0.125598172045576 0.165067591013578 -0.7608893500799 0.446933441494708 df.mm.trans1:exp6 0.466488786937367 0.225084353727944 2.07250650350048 0.0385181071332476 * df.mm.trans2:exp6 0.133423665996662 0.165067591013578 0.808297165890587 0.419144898098387 df.mm.trans1:exp7 0.342279099614571 0.225084353727944 1.52067033512369 0.128713163880148 df.mm.trans2:exp7 0.335079313713829 0.165067591013578 2.02995216478483 0.0426713042918904 * df.mm.trans1:exp8 0.241846023940036 0.225084353727944 1.07446839344663 0.282916641307465 df.mm.trans2:exp8 0.167864733147559 0.165067591013578 1.01694543499911 0.309467737574864 df.mm.trans1:probe2 0.0865209637589704 0.156800636237884 0.551789621744317 0.581237022996648 df.mm.trans1:probe3 0.189742019616497 0.156800636237884 1.21008450073275 0.226581693364079 df.mm.trans1:probe4 0.0484463562558373 0.156800636237884 0.308967855094278 0.757421426467442 df.mm.trans1:probe5 0.0877237855040573 0.156800636237884 0.559460647665806 0.575994244593537 df.mm.trans1:probe6 -0.0468803230849211 0.156800636237884 -0.298980439172443 0.765027795174015 df.mm.trans1:probe7 -0.0813306632100765 0.156800636237884 -0.518688349495526 0.604112614921614 df.mm.trans1:probe8 -0.018693076495894 0.156800636237884 -0.119215565347161 0.905132645226358 df.mm.trans1:probe9 -0.138843461710561 0.156800636237884 -0.88547766795997 0.376148602148633 df.mm.trans1:probe10 -0.233510475091209 0.156800636237884 -1.48921892598029 0.136799350316461 df.mm.trans1:probe11 0.109679249044416 0.156800636237884 0.699482168414293 0.484441448858594 df.mm.trans1:probe12 -0.139560521574179 0.156800636237884 -0.89005073526902 0.373689596450224 df.mm.trans1:probe13 0.117918102187278 0.156800636237884 0.75202566147999 0.452243080267819 df.mm.trans1:probe14 -0.148853647081635 0.156800636237884 -0.94931787684718 0.342727841706774 df.mm.trans1:probe15 0.110898928473668 0.156800636237884 0.70726070464039 0.479597653514913 df.mm.trans1:probe16 -0.197299806615176 0.156800636237884 -1.25828447734007 0.208633195646391 df.mm.trans1:probe17 0.0249102071756959 0.156800636237884 0.158865472573111 0.873812468584138 df.mm.trans1:probe18 -0.0337497885753352 0.156800636237884 -0.21524012520034 0.829631559887928 df.mm.trans1:probe19 -0.0271471343604833 0.156800636237884 -0.173131531936503 0.86258911359988 df.mm.trans1:probe20 -0.090501219093925 0.156800636237884 -0.577173800217394 0.563974349379545 df.mm.trans1:probe21 -0.135347998782811 0.156800636237884 -0.863185265252834 0.388278243804885 df.mm.trans2:probe2 0.324766819480277 0.156800636237884 2.07120855675336 0.0386394997906132 * df.mm.trans2:probe3 0.0850996808593434 0.156800636237884 0.542725354317042 0.587460685604267 df.mm.trans2:probe4 0.107282727043940 0.156800636237884 0.684198289101197 0.494035798218357 df.mm.trans2:probe5 -0.0672290796990787 0.156800636237884 -0.428755146102115 0.668209676333362 df.mm.trans2:probe6 -0.13879194035815 0.156800636237884 -0.88514908923958 0.376325668200737 df.mm.trans3:probe2 -0.0581066191424743 0.156800636237884 -0.370576424538992 0.711045047406287 df.mm.trans3:probe3 0.0436414064642039 0.156800636237884 0.278324166988678 0.780830978358973 df.mm.trans3:probe4 -0.0754102634178597 0.156800636237884 -0.480930850965769 0.630688976633906 df.mm.trans3:probe5 0.0213898464071428 0.156800636237884 0.136414283260254 0.891525970739233 df.mm.trans3:probe6 -0.110481955632133 0.156800636237884 -0.704601449859677 0.481250621964597 df.mm.trans3:probe7 0.0466829878922216 0.156800636237884 0.29772192901946 0.765987900333545 df.mm.trans3:probe8 -0.0129031093887411 0.156800636237884 -0.0822899045458311 0.934435487389714 df.mm.trans3:probe9 -0.0298743032270993 0.156800636237884 -0.190524119951762 0.848943777769905 df.mm.trans3:probe10 -0.0609515424402931 0.156800636237884 -0.388719994399912 0.697580295945866 df.mm.trans3:probe11 0.174547864864745 0.156800636237884 1.11318339678122 0.265943265692822