fitVsDatCorrelation=0.80979333406168 cont.fitVsDatCorrelation=0.277295508703673 fstatistic=7990.49876993055,50,646 cont.fstatistic=2971.62492150235,50,646 residuals=-0.597957865544092,-0.0864527826446878,-0.000304412771359097,0.0788212528356301,0.879564061389595 cont.residuals=-0.560944486344955,-0.152638972434479,-0.0498166508264044,0.0651358443623375,1.61617217609435 predictedValues: Include Exclude Both Lung 47.6946718288664 48.8829567301297 54.7415466521388 cerebhem 53.2427129010297 52.422918248383 49.9709855735985 cortex 47.4929770402631 43.0877557105624 45.7640225974068 heart 77.0675786130275 46.593181289489 96.1260833629181 kidney 47.9088693836880 44.0381776044529 44.7292436932579 liver 52.0067871973574 47.9448105007095 48.0145731469148 stomach 48.8428171906632 47.4936135814577 49.5017100038654 testicle 49.4534502410472 47.7915177109478 47.2676087176364 diffExp=-1.18828490126332,0.819794652646685,4.40522132970074,30.4743973235385,3.87069177923503,4.0619766966479,1.34920360920553,1.66193253009934 diffExpScore=1.02963237083863 diffExp1.5=0,0,0,1,0,0,0,0 diffExp1.5Score=0.5 diffExp1.4=0,0,0,1,0,0,0,0 diffExp1.4Score=0.5 diffExp1.3=0,0,0,1,0,0,0,0 diffExp1.3Score=0.5 diffExp1.2=0,0,0,1,0,0,0,0 diffExp1.2Score=0.5 cont.predictedValues: Include Exclude Both Lung 50.605380012259 52.6590249693283 49.7496591788568 cerebhem 51.7083376790601 47.1442655868480 55.3279467069293 cortex 50.79735255884 47.9791958287232 51.0338874187835 heart 51.044344314914 52.9248398530604 56.3691168977269 kidney 48.5098047680314 46.5894380035308 57.8245944359913 liver 51.0865192381257 48.0646210313631 49.1598570002669 stomach 48.96341759756 51.500776492948 56.3174771644294 testicle 51.402002235993 54.6043315732361 50.4771769449625 cont.diffExp=-2.05364495706928,4.56407209221219,2.81815673011682,-1.88049553814643,1.92036676450054,3.02189820676254,-2.53735889538803,-3.20232933724309 cont.diffExpScore=6.025839710099 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,0,0,0,0,0,0,0 cont.diffExp1.3Score=0 cont.diffExp1.2=0,0,0,0,0,0,0,0 cont.diffExp1.2Score=0 tran.correlation=0.0618253058304997 cont.tran.correlation=0.212808351974535 tran.covariance=0.00104130272910398 cont.tran.covariance=0.000302032041740385 tran.mean=50.1227997357547 cont.tran.mean=50.3489782339888 weightedLogRatios: wLogRatio Lung -0.0954125873291965 cerebhem 0.0615578511219884 cortex 0.371062720618567 heart 2.05974859144925 kidney 0.322415783551111 liver 0.318033464879025 stomach 0.108535635621173 testicle 0.132767276409404 cont.weightedLogRatios: wLogRatio Lung -0.156889229817345 cerebhem 0.3603319733502 cortex 0.222559673119988 heart -0.142931612483280 kidney 0.155976819182145 liver 0.237984635049110 stomach -0.197866745937168 testicle -0.23992492877623 varWeightedLogRatios=0.469129673916086 cont.varWeightedLogRatios=0.0564202547892526 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 3.76926116718057 0.0782538467752663 48.1671038869864 5.49954384795944e-216 *** df.mm.trans1 0.0615209835149416 0.0661867510510394 0.92950601952799 0.352974099834627 df.mm.trans2 0.138121477169536 0.0605720214745621 2.28028508554138 0.0229157395663149 * df.mm.exp2 0.271136731860033 0.0789192197525605 3.43562357446186 0.00062906712568213 *** df.mm.exp3 0.0486969303829167 0.0789192197525605 0.61704779311806 0.537420615315679 df.mm.exp4 -0.131149345507342 0.0789192197525605 -1.66181756381451 0.0970345063319731 . df.mm.exp5 0.102104538533975 0.0789192197525605 1.29378545370961 0.196201915320754 df.mm.exp6 0.198294694372346 0.0789192197525605 2.51262867263602 0.0122260077096427 * df.mm.exp7 0.0955698313604717 0.0789192197525605 1.21098297297055 0.226344763691095 df.mm.exp8 0.160429207339166 0.0789192197525605 2.03282809741617 0.0424783091599323 * df.mm.trans1:exp2 -0.161095473518196 0.0695259694646919 -2.31705468846438 0.0208125325960828 * df.mm.trans2:exp2 -0.20122166760243 0.0566310910860778 -3.55320132004129 0.000408306220832521 *** df.mm.trans1:exp3 -0.0529347720116895 0.0695259694646919 -0.761366902457534 0.446715793027 df.mm.trans2:exp3 -0.174886866479522 0.0566310910860778 -3.08817759159361 0.00210022298360125 ** df.mm.trans1:exp4 0.611012336827186 0.0695259694646918 8.78826058135706 1.36486004097411e-17 *** df.mm.trans2:exp4 0.0831747490697512 0.0566310910860778 1.46871175311328 0.142397752530211 df.mm.trans1:exp5 -0.0976235766258466 0.0695259694646919 -1.40413110924579 0.160760382995259 df.mm.trans2:exp5 -0.206476410600563 0.0566310910860778 -3.64599033217856 0.000287802131533419 *** df.mm.trans1:exp6 -0.111740151236485 0.0695259694646919 -1.60717142237379 0.108505398451176 df.mm.trans2:exp6 -0.217672928808083 0.0566310910860778 -3.84370007064187 0.000133172874514707 *** df.mm.trans1:exp7 -0.0717821916992828 0.0695259694646919 -1.03245150340171 0.302247019803196 df.mm.trans2:exp7 -0.124403382878750 0.0566310910860778 -2.19673293402840 0.0283940102292615 * df.mm.trans1:exp8 -0.124217069342278 0.0695259694646919 -1.78662836776927 0.074466400259556 . df.mm.trans2:exp8 -0.183009839937256 0.0566310910860778 -3.23161423217302 0.00129347752170405 ** df.mm.trans1:probe2 -0.0690402273927198 0.0476011772602839 -1.45038907368208 0.147435402243188 df.mm.trans1:probe3 -0.0261393377498498 0.0476011772602839 -0.549132169713357 0.583104505486684 df.mm.trans1:probe4 -0.140559187567525 0.0476011772602839 -2.95285107758881 0.0032628754223951 ** df.mm.trans1:probe5 -0.0649020827557105 0.0476011772602839 -1.36345541205473 0.173213987029572 df.mm.trans1:probe6 -0.044107039631555 0.0476011772602839 -0.926595562760499 0.354482595853164 df.mm.trans1:probe7 -0.0315932391798121 0.0476011772602839 -0.663707097138792 0.507114585246087 df.mm.trans1:probe8 0.126011192246271 0.0476011772602839 2.64722848254867 0.00831336958552926 ** df.mm.trans1:probe9 0.113059498039051 0.0476011772602839 2.37514079580090 0.0178331900427416 * df.mm.trans1:probe10 0.181587982252537 0.0476011772602839 3.81477922824494 0.000149385738916832 *** df.mm.trans1:probe11 0.14539997020668 0.0476011772602839 3.05454567670944 0.00234679807894720 ** df.mm.trans1:probe12 0.406703674227685 0.0476011772602839 8.54398352384909 9.31874234314808e-17 *** df.mm.trans1:probe13 0.186442200256689 0.0476011772602839 3.91675607595208 9.93010460627919e-05 *** df.mm.trans2:probe2 -0.0635055915753291 0.0476011772602839 -1.33411808762795 0.182635268768735 df.mm.trans2:probe3 -0.0509693928587319 0.0476011772602839 -1.07075908186116 0.284677654923487 df.mm.trans2:probe4 0.00588449170023651 0.0476011772602839 0.123620717783092 0.901654040164732 df.mm.trans2:probe5 -0.120609338373865 0.0476011772602839 -2.53374696416375 0.0115202610195999 * df.mm.trans2:probe6 -0.058061636848251 0.0476011772602839 -1.21975211938077 0.223003982583805 df.mm.trans3:probe2 0.337122932803796 0.0476011772602839 7.08223939421506 3.71580444263384e-12 *** df.mm.trans3:probe3 0.0693492876584738 0.0476011772602839 1.45688177582817 0.145634899740782 df.mm.trans3:probe4 0.0239365515136828 0.0476011772602839 0.502856292456748 0.615236701317962 df.mm.trans3:probe5 0.0787404985641598 0.0476011772602839 1.65417124315236 0.0985784975313247 . df.mm.trans3:probe6 -0.0153821819222834 0.0476011772602839 -0.323147090211097 0.746688421206193 df.mm.trans3:probe7 -0.0147833694406778 0.0476011772602839 -0.310567307187428 0.75622975869355 df.mm.trans3:probe8 -0.124473524361678 0.0476011772602839 -2.6149253343264 0.00913295351346595 ** df.mm.trans3:probe9 0.0635408684462895 0.0476011772602839 1.33485918003345 0.182392680497369 df.mm.trans3:probe10 -0.0808577646306589 0.0476011772602839 -1.69865052262316 0.0898665578674633 . cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.05219598367214 0.128145808759981 31.6217597975598 2.55972156014495e-133 *** df.mm.trans1 -0.142635334574809 0.108385147723009 -1.31600443023181 0.188639343137389 df.mm.trans2 -0.0924952648718298 0.0991906596282245 -0.932499745626356 0.351426698014885 df.mm.exp2 -0.195338646738326 0.129235400669082 -1.51149488241621 0.131151413877529 df.mm.exp3 -0.114770056700532 0.129235400669082 -0.888069802131154 0.374833737056984 df.mm.exp4 -0.111245813801606 0.129235400669082 -0.860799852251471 0.389667654455787 df.mm.exp5 -0.315166314015217 0.129235400669082 -2.43869955432897 0.0150085024238796 * df.mm.exp6 -0.0699022682298403 0.129235400669082 -0.540891024192596 0.588769151910553 df.mm.exp7 -0.179226511854024 0.129235400669082 -1.38682211627872 0.165974354506512 df.mm.exp8 0.0373771253145824 0.129235400669082 0.289217390289906 0.772507815812407 df.mm.trans1:exp2 0.216899790643718 0.113853336979859 1.90508066252013 0.0572133591357412 . df.mm.trans2:exp2 0.0847133894695104 0.0927371275309536 0.913478686745338 0.361331635009168 df.mm.trans1:exp3 0.118556399949140 0.113853336979859 1.04130808190640 0.29812213557305 df.mm.trans2:exp3 0.0216999151073905 0.0927371275309536 0.233993824104025 0.81506390863733 df.mm.trans1:exp4 0.119882670109470 0.113853336979859 1.05295701724296 0.292754376513825 df.mm.trans2:exp4 0.116280966583220 0.0927371275309536 1.25387716526381 0.210340209173440 df.mm.trans1:exp5 0.272874356698306 0.113853336979859 2.39671812822296 0.0168258568844600 * df.mm.trans2:exp5 0.192702538860159 0.0927371275309536 2.07794379652140 0.0381088669389881 * df.mm.trans1:exp6 0.0793650242538498 0.113853336979859 0.697081230635248 0.486002734065614 df.mm.trans2:exp6 -0.0213889930988671 0.0927371275309536 -0.230641099938403 0.81766665728812 df.mm.trans1:exp7 0.146242056499319 0.113853336979859 1.28447756015433 0.199435331409090 df.mm.trans2:exp7 0.156985758630620 0.0927371275309536 1.69280376490227 0.0909749783793241 . df.mm.trans1:exp8 -0.0217578945988362 0.113853336979859 -0.191104583984966 0.848503701747798 df.mm.trans2:exp8 -0.00110155117965547 0.0927371275309536 -0.0118782111219457 0.99052644888336 df.mm.trans1:probe2 -0.0511967001803679 0.0779500511388824 -0.656788538716306 0.511550796020053 df.mm.trans1:probe3 0.0473141336738601 0.0779500511388824 0.606980149244049 0.544077353592863 df.mm.trans1:probe4 0.0114308010205256 0.0779500511388824 0.146642636579667 0.883459848512839 df.mm.trans1:probe5 0.0219700519849161 0.0779500511388824 0.281847820032502 0.77815046688723 df.mm.trans1:probe6 0.0547747646083932 0.0779500511388824 0.702690553862522 0.482501747695305 df.mm.trans1:probe7 0.0238660851091422 0.0779500511388824 0.306171513173486 0.759572707042216 df.mm.trans1:probe8 0.0551617162796449 0.0779500511388824 0.707654651584053 0.479414964842168 df.mm.trans1:probe9 0.0704169436952157 0.0779500511388824 0.903359813962854 0.366671687216895 df.mm.trans1:probe10 -0.0219555864184280 0.0779500511388824 -0.281662245215337 0.778292708601846 df.mm.trans1:probe11 0.0410898402102067 0.0779500511388824 0.527130381697859 0.598284019790983 df.mm.trans1:probe12 0.0272603019078163 0.0779500511388824 0.349714997097911 0.72666657547842 df.mm.trans1:probe13 0.053304303739958 0.0779500511388824 0.683826411415518 0.49432999725599 df.mm.trans2:probe2 -0.00367539886473224 0.0779500511388824 -0.047150692155209 0.962407698201943 df.mm.trans2:probe3 -0.045410006021494 0.0779500511388824 -0.582552613603649 0.560397784805789 df.mm.trans2:probe4 0.0036975940400704 0.0779500511388824 0.0474354280214962 0.96218085397247 df.mm.trans2:probe5 0.0718365994494173 0.0779500511388824 0.921572191420724 0.357095804236553 df.mm.trans2:probe6 0.0397419235900969 0.0779500511388824 0.509838326074852 0.610338864730763 df.mm.trans3:probe2 0.0331711023864051 0.0779500511388824 0.425543048423467 0.67058257396563 df.mm.trans3:probe3 0.0703798900414014 0.0779500511388824 0.902884462718398 0.366923752265353 df.mm.trans3:probe4 0.0106319479462434 0.0779500511388824 0.136394367815110 0.891552019564238 df.mm.trans3:probe5 -0.00785877099537159 0.0779500511388824 -0.100818035146247 0.919726191186955 df.mm.trans3:probe6 0.207001344003082 0.0779500511388824 2.65556392816563 0.00811288526819571 ** df.mm.trans3:probe7 0.0711114214167513 0.0779500511388824 0.912269079722004 0.361967398755362 df.mm.trans3:probe8 0.191389498852265 0.0779500511388824 2.45528381387806 0.0143397726458288 * df.mm.trans3:probe9 0.131974511932026 0.0779500511388824 1.69306511033442 0.090925198679759 . df.mm.trans3:probe10 0.191581341211037 0.0779500511388824 2.45774490730865 0.0142428116491517 *