fitVsDatCorrelation=0.957071500326838 cont.fitVsDatCorrelation=0.248416733340338 fstatistic=13673.7516285137,62,922 cont.fstatistic=1210.80443151873,62,922 residuals=-0.56178164505091,-0.0917171031099883,-0.0024301987122015,0.0857678097038839,0.54640938765971 cont.residuals=-0.80959960364548,-0.29495821396856,-0.0824985455554415,0.199481548778060,2.51704971382974 predictedValues: Include Exclude Both Lung 63.827033036436 75.6368286097809 77.4834212381011 cerebhem 66.9852647666865 64.7043172957532 61.7588254648707 cortex 55.1780408135656 61.2436910434004 68.170082839978 heart 56.7749633580073 87.4300439746529 106.274835228754 kidney 62.7295349204005 80.203782370276 80.454675367799 liver 64.1832551857401 86.6284336146272 93.8764816642893 stomach 60.6181312792193 76.644539539458 90.6440710648086 testicle 62.1465010525051 80.7342098739013 91.636959924878 diffExp=-11.8097955733449,2.28094747093327,-6.06565022983484,-30.6550806166456,-17.4742474498755,-22.4451784288870,-16.0264082602387,-18.5877088213962 diffExpScore=1.02924785377501 diffExp1.5=0,0,0,-1,0,0,0,0 diffExp1.5Score=0.5 diffExp1.4=0,0,0,-1,0,0,0,0 diffExp1.4Score=0.5 diffExp1.3=0,0,0,-1,0,-1,0,0 diffExp1.3Score=0.666666666666667 diffExp1.2=0,0,0,-1,-1,-1,-1,-1 diffExp1.2Score=0.833333333333333 cont.predictedValues: Include Exclude Both Lung 83.1802377807039 54.4765958554163 72.8648721366811 cerebhem 77.9102358887074 75.3004850476989 71.653891433358 cortex 78.701692111748 76.8767395063118 78.626825069882 heart 79.4617902782262 62.0875573983851 68.8547797618943 kidney 76.0320592715421 73.6733495115493 65.910152140551 liver 71.994641328743 83.9675611020369 62.646301173292 stomach 77.24324373079 71.4298510872603 69.3251770244509 testicle 78.7575600165877 80.8174497899984 75.2654657641665 cont.diffExp=28.7036419252876,2.60975084100848,1.82495260543614,17.3742328798411,2.35870975999276,-11.9729197732939,5.81339264352967,-2.05988977341076 cont.diffExpScore=1.59286987447124 cont.diffExp1.5=1,0,0,0,0,0,0,0 cont.diffExp1.5Score=0.5 cont.diffExp1.4=1,0,0,0,0,0,0,0 cont.diffExp1.4Score=0.5 cont.diffExp1.3=1,0,0,0,0,0,0,0 cont.diffExp1.3Score=0.5 cont.diffExp1.2=1,0,0,1,0,0,0,0 cont.diffExp1.2Score=0.666666666666667 tran.correlation=0.0476271657595141 cont.tran.correlation=-0.786018257454789 tran.covariance=0.000781086291403134 cont.tran.covariance=-0.00456017322653799 tran.mean=69.1042856709007 cont.tran.mean=75.1194406066066 weightedLogRatios: wLogRatio Lung -0.719989921844056 cerebhem 0.145062729844239 cortex -0.423723807932246 heart -1.83705457816342 kidney -1.04726323580366 liver -1.29301291578302 stomach -0.99038830238372 testicle -1.11479112308617 cont.weightedLogRatios: wLogRatio Lung 1.78157660844013 cerebhem 0.147816765261003 cortex 0.102148962236501 heart 1.04907686028625 kidney 0.135995273657593 liver -0.669739172870441 stomach 0.337060673740545 testicle -0.113067109875673 varWeightedLogRatios=0.351299646264664 cont.varWeightedLogRatios=0.562940962834043 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 3.87666257439947 0.0669387005181905 57.9136216327653 0 *** df.mm.trans1 0.197138836406761 0.0573228784446512 3.43909520519124 0.000609809146456687 *** df.mm.trans2 0.448415267349714 0.050389623157977 8.89896052494544 2.93503344974297e-18 *** df.mm.exp2 0.119007568298713 0.0640056399448066 1.85932940286724 0.0632988411820928 . df.mm.exp3 -0.228636034473232 0.0640056399448066 -3.57212324836357 0.000372422791306207 *** df.mm.exp4 -0.288150242491442 0.0640056399448066 -4.50195080839626 7.59517513894013e-06 *** df.mm.exp5 0.00365293919078604 0.0640056399448066 0.0570721454224354 0.954500090694282 df.mm.exp6 -0.0506655823347144 0.0640056399448066 -0.791579966678005 0.428809224391599 df.mm.exp7 -0.195224259560039 0.0640056399448066 -3.05011026728871 0.00235297952349677 ** df.mm.exp8 -0.129233902798858 0.0640056399448066 -2.01910179962733 0.0437656279085502 * df.mm.trans1:exp2 -0.0707117178644737 0.0584288880088738 -1.21021844286570 0.226505251423256 df.mm.trans2:exp2 -0.275122956597460 0.041315462928264 -6.65907960598568 4.72806881667194e-11 *** df.mm.trans1:exp3 0.0830242813465022 0.0584288880088738 1.42094577144602 0.155670631151352 df.mm.trans2:exp3 0.0175535597307748 0.041315462928264 0.424866587148085 0.671033063486954 df.mm.trans1:exp4 0.171068869179885 0.0584288880088738 2.92781319325989 0.00349749839299317 ** df.mm.trans2:exp4 0.433045903164926 0.0413154629282640 10.4814486507587 2.31001466783038e-24 *** df.mm.trans1:exp5 -0.0209973670131302 0.0584288880088738 -0.359366192455027 0.719403448549993 df.mm.trans2:exp5 0.0549744208047157 0.0413154629282640 1.33060159340748 0.183649121810136 df.mm.trans1:exp6 0.0562311204450597 0.0584288880088738 0.962385600022367 0.336108270989888 df.mm.trans2:exp6 0.186350361257097 0.0413154629282640 4.51042655822727 7.304228886502e-06 *** df.mm.trans1:exp7 0.143641487998420 0.0584288880088738 2.45839845482948 0.0141387443001870 * df.mm.trans2:exp7 0.208459307966138 0.041315462928264 5.04555179081705 5.44642246088453e-07 *** df.mm.trans1:exp8 0.102551604826225 0.0584288880088738 1.75515243094563 0.0795653328671631 . df.mm.trans2:exp8 0.194452986934243 0.0413154629282640 4.70654261509478 2.90578474850013e-06 *** df.mm.trans1:probe2 0.217736290921589 0.0423357514498751 5.14308317355334 3.30136055329927e-07 *** df.mm.trans1:probe3 0.102108897087103 0.0423357514498751 2.41188342217095 0.0160648229474247 * df.mm.trans1:probe4 0.0345255696507809 0.0423357514498751 0.815518054324811 0.414986452867064 df.mm.trans1:probe5 2.34676183609125 0.0423357514498751 55.4321526303786 8.54810641100614e-296 *** df.mm.trans1:probe6 0.0969011233619896 0.0423357514498751 2.28887217170857 0.0223121625410991 * df.mm.trans1:probe7 0.77176842109657 0.0423357514498751 18.2297088079406 1.20484015878384e-63 *** df.mm.trans1:probe8 0.394797465884941 0.0423357514498751 9.32539171655842 7.96822963111772e-20 *** df.mm.trans1:probe9 0.198870793461156 0.0423357514498751 4.69746695524269 3.03471837446341e-06 *** df.mm.trans1:probe10 -0.134203476012038 0.0423357514498751 -3.16997977869682 0.00157478728167429 ** df.mm.trans1:probe11 -0.144631618257833 0.0423357514498751 -3.41629977748417 0.000662514079995528 *** df.mm.trans1:probe12 -0.271199871846011 0.0423357514498751 -6.40593027307211 2.37943628183218e-10 *** df.mm.trans1:probe13 -0.256502177016657 0.0423357514498751 -6.0587604620731 1.99639726888173e-09 *** df.mm.trans1:probe14 -0.251054958574391 0.0423357514498751 -5.93009336025692 4.27720961297645e-09 *** df.mm.trans1:probe15 -0.15060040219166 0.0423357514498751 -3.55728662026866 0.000393790409009896 *** df.mm.trans1:probe16 0.0858058138456926 0.0423357514498751 2.02679321630290 0.0429709314268984 * df.mm.trans1:probe17 -0.18504240955949 0.0423357514498751 -4.37083087514291 1.37846696393019e-05 *** df.mm.trans1:probe18 -0.197899025134466 0.0423357514498751 -4.67451310906282 3.38581326243465e-06 *** df.mm.trans1:probe19 -0.115012550232242 0.0423357514498751 -2.71667671633076 0.00671759642643422 ** df.mm.trans1:probe20 0.00710128609644429 0.0423357514498751 0.167737334362710 0.866826707770925 df.mm.trans1:probe21 0.332908170078324 0.0423357514498751 7.86352335029372 1.04074266623221e-14 *** df.mm.trans2:probe2 -0.0975701694641843 0.0423357514498751 -2.30467550764290 0.0214061645295006 * df.mm.trans2:probe3 -0.104827018153235 0.0423357514498751 -2.47608733902712 0.0134616812979265 * df.mm.trans2:probe4 0.114341818112930 0.0423357514498751 2.70083355549528 0.0070434266664042 ** df.mm.trans2:probe5 -0.0434525497291194 0.0423357514498751 -1.02637955489149 0.304981906672801 df.mm.trans2:probe6 0.148817394030447 0.0423357514498751 3.5151707229443 0.000460863092679989 *** df.mm.trans3:probe2 -0.457729149192296 0.0423357514498751 -10.8118820031868 9.80135438522813e-26 *** df.mm.trans3:probe3 -0.328446127158782 0.0423357514498751 -7.75812678198608 2.28033217073239e-14 *** df.mm.trans3:probe4 0.022364763905367 0.0423357514498751 0.528271334260987 0.5974381483049 df.mm.trans3:probe5 -0.275267931902508 0.0423357514498751 -6.50202069115087 1.29680236455572e-10 *** df.mm.trans3:probe6 0.368208650118988 0.0423357514498751 8.69734532892233 1.53903520187576e-17 *** df.mm.trans3:probe7 -0.811860222289595 0.0423357514498750 -19.1767051365753 3.08520842270325e-69 *** df.mm.trans3:probe8 -0.0610259030558197 0.0423357514498751 -1.44147442683458 0.149790242289078 df.mm.trans3:probe9 -0.594463293810616 0.0423357514498751 -14.0416379407946 9.87681090758331e-41 *** df.mm.trans3:probe10 -0.110735866407567 0.0423357514498751 -2.61565845922627 0.00905109633782424 ** df.mm.trans3:probe11 -0.364020872405593 0.0423357514498751 -8.5984270962236 3.43048126233275e-17 *** df.mm.trans3:probe12 0.100456751597365 0.0423357514498751 2.37285859249019 0.0178552687210784 * df.mm.trans3:probe13 0.325797502807866 0.0423357514498751 7.69556442605266 3.61714413999956e-14 *** df.mm.trans3:probe14 -0.223415880853625 0.0423357514498751 -5.27723905215539 1.63551531145091e-07 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.40484784115738 0.223701768457123 19.6907153284381 2.53341733033390e-72 *** df.mm.trans1 0.0911458511480922 0.191566749606029 0.475791604417469 0.634335561429551 df.mm.trans2 -0.394927271998584 0.168396573657181 -2.34522154116134 0.0192269797253911 * df.mm.exp2 0.27502214452453 0.213899802894921 1.28575221109313 0.198852377536775 df.mm.exp3 0.21298077314226 0.213899802894921 0.995703456757682 0.319655490531466 df.mm.exp4 0.141647930661895 0.213899802894921 0.662216274839111 0.507998109644288 df.mm.exp5 0.312329417234325 0.213899802894921 1.46016692398617 0.144584851213691 df.mm.exp6 0.439343287747956 0.213899802894921 2.05396770731848 0.0402603324248214 * df.mm.exp7 0.246692862199829 0.213899802894921 1.15331037645237 0.249081905390408 df.mm.exp8 0.307371461306941 0.213899802894921 1.43698805303686 0.151060639338596 df.mm.trans1:exp2 -0.340474595417643 0.195262911819095 -1.74367263217442 0.081549486981424 . df.mm.trans2:exp2 0.0486932562065723 0.138071729061513 0.35266637520617 0.724419173370213 df.mm.trans1:exp3 -0.268325910104444 0.195262911819095 -1.37417755171570 0.169720512281331 df.mm.trans2:exp3 0.131451404862295 0.138071729061513 0.952051558677383 0.341320344213143 df.mm.trans1:exp4 -0.187381442909152 0.195262911819095 -0.959636631265414 0.337489705787892 df.mm.trans2:exp4 -0.0108735013436578 0.138071729061513 -0.0787525543249585 0.9372465310102 df.mm.trans1:exp5 -0.40218412631303 0.195262911819095 -2.05970566845608 0.0397069431194631 * df.mm.trans2:exp5 -0.0104594667384082 0.138071729061513 -0.075753862209898 0.939631356855729 df.mm.trans1:exp6 -0.583761390430334 0.195262911819095 -2.98961735739744 0.00286744561174037 ** df.mm.trans2:exp6 -0.00668391643752944 0.138071729061513 -0.0484090152485281 0.961400758528386 df.mm.trans1:exp7 -0.320743202981406 0.195262911819095 -1.64262224706843 0.100802091315033 df.mm.trans2:exp7 0.024251826637713 0.138071729061513 0.175646577344653 0.860610175584498 df.mm.trans1:exp8 -0.362006980937289 0.195262911819095 -1.85394644361688 0.0640660276313431 . df.mm.trans2:exp8 0.087050268060511 0.138071729061513 0.630471340166448 0.528542479030938 df.mm.trans1:probe2 -0.142280312770142 0.141481420986424 -1.00564661973387 0.31484943653801 df.mm.trans1:probe3 -0.165594980111759 0.141481420986424 -1.17043622376149 0.242127898737358 df.mm.trans1:probe4 -0.225398483913525 0.141481420986424 -1.59313132665775 0.111473474923246 df.mm.trans1:probe5 -0.182184746057320 0.141481420986424 -1.28769378189099 0.198175691431287 df.mm.trans1:probe6 -0.216647493039212 0.141481420986424 -1.53127874691052 0.126043536340330 df.mm.trans1:probe7 -0.308864688526746 0.141481420986424 -2.18307595706424 0.0292817906593957 * df.mm.trans1:probe8 0.0156483519802182 0.141481420986424 0.110603582230912 0.911954777094414 df.mm.trans1:probe9 -0.0798884862292712 0.141481420986424 -0.564657081278093 0.572444376854725 df.mm.trans1:probe10 -0.0276342867818854 0.141481420986424 -0.195320958675819 0.845184724563025 df.mm.trans1:probe11 -0.134252809132338 0.141481420986424 -0.9489076954155 0.342916208648753 df.mm.trans1:probe12 -0.0374140221516829 0.141481420986424 -0.264444772259342 0.791496316394987 df.mm.trans1:probe13 -0.0793020885364003 0.141481420986424 -0.560512383770939 0.575266167242889 df.mm.trans1:probe14 -0.210092530119108 0.141481420986424 -1.48494783735079 0.137899445267616 df.mm.trans1:probe15 -0.193492450915127 0.141481420986424 -1.36761738443166 0.171765135459453 df.mm.trans1:probe16 -0.0141814825890926 0.141481420986424 -0.100235652781954 0.920179032446126 df.mm.trans1:probe17 -0.207071992276174 0.141481420986424 -1.46359847697631 0.143644517691915 df.mm.trans1:probe18 -0.169859338882257 0.141481420986424 -1.20057699235687 0.230223688744848 df.mm.trans1:probe19 -0.0533017359777874 0.141481420986424 -0.376740179778814 0.706453385321305 df.mm.trans1:probe20 -0.115694459721368 0.141481420986424 -0.817736059722428 0.413719182982606 df.mm.trans1:probe21 -0.0769284420756193 0.141481420986424 -0.543735294282923 0.586755087573081 df.mm.trans2:probe2 -0.121357192873349 0.141481420986424 -0.857760630528262 0.391247564100838 df.mm.trans2:probe3 0.114667582378475 0.141481420986424 0.810478023043591 0.417874633060639 df.mm.trans2:probe4 -0.100131411134920 0.141481420986424 -0.707735407495857 0.479288444422823 df.mm.trans2:probe5 -0.112990053925687 0.141481420986424 -0.79862114147503 0.424715787521118 df.mm.trans2:probe6 -0.0231767958104353 0.141481420986424 -0.163815118966463 0.869912591088523 df.mm.trans3:probe2 0.177804853844527 0.141481420986424 1.25673641531766 0.209167388307632 df.mm.trans3:probe3 0.290760328848286 0.141481420986424 2.0551131506955 0.04014934140368 * df.mm.trans3:probe4 -0.0945855915220885 0.141481420986424 -0.668537189283422 0.503958086343216 df.mm.trans3:probe5 0.185367296758946 0.141481420986424 1.31018825981917 0.190458466729532 df.mm.trans3:probe6 0.272268834178186 0.141481420986424 1.92441404871324 0.0546101906685964 . df.mm.trans3:probe7 0.188178569783593 0.141481420986424 1.33005852267804 0.183827905636278 df.mm.trans3:probe8 0.269333698028535 0.141481420986424 1.90366831313052 0.0572645300902801 . df.mm.trans3:probe9 0.152443098930347 0.141481420986424 1.07747786152766 0.281548662504713 df.mm.trans3:probe10 0.321484972390348 0.141481420986424 2.27227695445041 0.0232993300140308 * df.mm.trans3:probe11 0.310918538221789 0.141481420986424 2.19759270195359 0.0282261840317477 * df.mm.trans3:probe12 0.193390047910284 0.141481420986424 1.36689359325025 0.171991847393893 df.mm.trans3:probe13 0.22744860966447 0.141481420986424 1.60762175046500 0.108260410939740 df.mm.trans3:probe14 0.130750087279146 0.141481420986424 0.924150226704978 0.355649900880469