fitVsDatCorrelation=0.860916920455601 cont.fitVsDatCorrelation=0.265684060166369 fstatistic=12841.2661447217,72,1152 cont.fstatistic=3564.48328410457,72,1152 residuals=-0.476319428153373,-0.0924011450284463,-0.00568279367921804,0.0747158195853979,0.788959687586986 cont.residuals=-0.633900370715223,-0.201969881070316,-0.0507379733108565,0.194040988221133,1.26800921038774 predictedValues: Include Exclude Both Lung 66.1651830334709 112.314302149278 54.0293631420946 cerebhem 67.218088517542 115.634226837117 62.4963874181284 cortex 65.6512182188246 114.633898898816 57.0806755023092 heart 62.8003132162629 104.605817573152 53.8584456609064 kidney 67.3319991638037 118.555649396737 52.209756208773 liver 64.2994203908608 105.362015549964 53.0011193724864 stomach 67.2530597184039 102.316700057650 54.5457440194577 testicle 63.9537194671372 112.925347599706 54.1877702274775 diffExp=-46.1491191158068,-48.4161383195745,-48.9826806799919,-41.8055043568892,-51.2236502329334,-41.0625951591034,-35.0636403392457,-48.9716281325691 diffExpScore=0.9972427100837 diffExp1.5=-1,-1,-1,-1,-1,-1,-1,-1 diffExp1.5Score=0.888888888888889 diffExp1.4=-1,-1,-1,-1,-1,-1,-1,-1 diffExp1.4Score=0.888888888888889 diffExp1.3=-1,-1,-1,-1,-1,-1,-1,-1 diffExp1.3Score=0.888888888888889 diffExp1.2=-1,-1,-1,-1,-1,-1,-1,-1 diffExp1.2Score=0.888888888888889 cont.predictedValues: Include Exclude Both Lung 58.522366866008 74.4020334587353 63.935594231192 cerebhem 61.8565831704346 70.8900413759522 63.2025230776068 cortex 56.7311868497884 77.3579025325818 63.1695142511572 heart 61.2473648918885 63.7766275831814 60.6325994097632 kidney 59.8520922518573 73.3433452577072 57.7323497465277 liver 58.4239348556222 81.9410390414552 58.8544363079453 stomach 61.3654054777656 63.9609069966408 64.4876954915043 testicle 61.5466938167635 68.3630384900111 70.8866638857378 cont.diffExp=-15.8796665927273,-9.03345820551754,-20.6267156827934,-2.52926269129289,-13.4912530058499,-23.5171041858329,-2.59550151887525,-6.81634467324766 cont.diffExpScore=0.989527623185617 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,-1,0,0 cont.diffExp1.4Score=0.5 cont.diffExp1.3=0,0,-1,0,0,-1,0,0 cont.diffExp1.3Score=0.666666666666667 cont.diffExp1.2=-1,0,-1,0,-1,-1,0,0 cont.diffExp1.2Score=0.8 tran.correlation=0.40799009591524 cont.tran.correlation=-0.79275985161002 tran.covariance=0.000570359698241268 cont.tran.covariance=-0.00219360768940757 tran.mean=88.1888099867954 cont.tran.mean=65.8487851822746 weightedLogRatios: wLogRatio Lung -2.35826335033782 cerebhem -2.42991249624816 cortex -2.48764778236355 heart -2.24254149506700 kidney -2.54162292819988 liver -2.17812069706531 stomach -1.85395103898664 testicle -2.52582787838343 cont.weightedLogRatios: wLogRatio Lung -1.00577815060396 cerebhem -0.571550326815414 cortex -1.30044638494153 heart -0.167332960561288 kidney -0.852438189354803 liver -1.43322181200915 stomach -0.171401784580910 testicle -0.438243905109728 varWeightedLogRatios=0.053720682210175 cont.varWeightedLogRatios=0.235509773670815 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 5.1380718429349 0.0675458744096698 76.067885534684 0 *** df.mm.trans1 -0.863868021907672 0.0580447264137169 -14.8827994424576 5.93124895724898e-46 *** df.mm.trans2 -0.368783608248928 0.0500933611606547 -7.36192580622012 3.44110820107199e-13 *** df.mm.exp2 -0.100662313896983 0.0626954701328874 -1.60557554929602 0.108641268332678 df.mm.exp3 -0.0422938456880549 0.0626954701328874 -0.674591730445758 0.500070540784061 df.mm.exp4 -0.120127937822840 0.0626954701328874 -1.91605450231446 0.0556054304633974 . df.mm.exp5 0.105820743531975 0.0626954701328874 1.68785309859996 0.0917101105340023 . df.mm.exp6 -0.0732881672563921 0.0626954701328874 -1.16895474427503 0.24266368983226 df.mm.exp7 -0.0864322068865696 0.0626954701328875 -1.37860369662067 0.16828461874857 df.mm.exp8 -0.0314965314286657 0.0626954701328875 -0.502373319187281 0.61550095592339 df.mm.trans1:exp2 0.116450311033553 0.0580447264137169 2.00621689907791 0.0450665220612823 * df.mm.trans2:exp2 0.129793095955292 0.0374677097892485 3.46413209361775 0.000551493720164366 *** df.mm.trans1:exp3 0.0344956139903135 0.0580447264137169 0.594293678713277 0.552432394518954 df.mm.trans2:exp3 0.0627361978745136 0.0374677097892485 1.67440706217160 0.0943220576676829 . df.mm.trans1:exp4 0.0679336102648692 0.0580447264137169 1.17036662005552 0.242095517104015 df.mm.trans2:exp4 0.0490258949784115 0.0374677097892485 1.30848389864703 0.190970222122165 df.mm.trans1:exp5 -0.0883395379339409 0.0580447264137169 -1.52192185909011 0.128303090176275 df.mm.trans2:exp5 -0.0517394882919556 0.0374677097892485 -1.38090875004061 0.167574844194851 df.mm.trans1:exp6 0.0446843957805187 0.0580447264137169 0.769826968638431 0.441560363129407 df.mm.trans2:exp6 0.00938914437057024 0.0374677097892485 0.250592961869916 0.80217350868304 df.mm.trans1:exp7 0.102740333465166 0.0580447264137169 1.77002011746733 0.0769882558451358 . df.mm.trans2:exp7 -0.00679609782150176 0.0374677097892485 -0.181385461233927 0.856096937592766 df.mm.trans1:exp8 -0.00249816866446041 0.0580447264137169 -0.0430386844560964 0.965678154989196 df.mm.trans2:exp8 0.0369222808483947 0.0374677097892485 0.985442693350574 0.324613587446879 df.mm.trans1:probe2 -0.153162894159748 0.0435335448102876 -3.51827297380005 0.000451292381182874 *** df.mm.trans1:probe3 -0.168634867295941 0.0435335448102876 -3.87367644952473 0.000113241593203955 *** df.mm.trans1:probe4 -0.138748531045565 0.0435335448102876 -3.18716363783858 0.00147538757437801 ** df.mm.trans1:probe5 -0.153440740780602 0.0435335448102876 -3.52465533071732 0.00044067248453931 *** df.mm.trans1:probe6 0.129421198453894 0.0435335448102876 2.97290742157321 0.00301126634216111 ** df.mm.trans1:probe7 -0.0970745174194655 0.0435335448102876 -2.22987854176592 0.0259476222163379 * df.mm.trans1:probe8 -0.438191125500677 0.0435335448102876 -10.0655971713364 6.71141501789128e-23 *** df.mm.trans1:probe9 -0.156255359919050 0.0435335448102876 -3.58930936132093 0.000345494316198380 *** df.mm.trans1:probe10 0.264842146282957 0.0435335448102876 6.08363383770142 1.59655827352167e-09 *** df.mm.trans1:probe11 -0.0373588675703029 0.0435335448102876 -0.858162773858801 0.390981096353769 df.mm.trans1:probe12 -0.144500458767476 0.0435335448102876 -3.31928997275978 0.000930707494573087 *** df.mm.trans1:probe13 0.139828309972096 0.0435335448102876 3.21196701489497 0.00135478066330837 ** df.mm.trans1:probe14 0.0375744576216079 0.0435335448102876 0.863115048070436 0.388253866905085 df.mm.trans1:probe15 0.00299293726732445 0.0435335448102876 0.068750139240147 0.945200438203326 df.mm.trans1:probe16 -0.294653125667115 0.0435335448102876 -6.76841564249286 2.06873331813065e-11 *** df.mm.trans1:probe17 -0.368773210408845 0.0435335448102876 -8.47101268724843 7.33111695929535e-17 *** df.mm.trans1:probe18 -0.462404288467569 0.0435335448102876 -10.6217926999204 3.30953863524091e-25 *** df.mm.trans1:probe19 -0.255353496555289 0.0435335448102876 -5.86567203906964 5.83882803782959e-09 *** df.mm.trans1:probe20 -0.403405932659334 0.0435335448102876 -9.2665537441831 9.15446621429755e-20 *** df.mm.trans1:probe21 -0.314610166329377 0.0435335448102876 -7.22684467117022 8.97719063086723e-13 *** df.mm.trans1:probe22 -0.0473049118762032 0.0435335448102876 -1.08663128817905 0.277427102414349 df.mm.trans1:probe23 -0.0860317355387013 0.0435335448102876 -1.97621709680694 0.0483684499436811 * df.mm.trans1:probe24 -0.152485198087467 0.0435335448102876 -3.50270575832898 0.000478206816105947 *** df.mm.trans1:probe25 -0.134943968137340 0.0435335448102876 -3.09976981487276 0.00198368275433457 ** df.mm.trans1:probe26 0.126938072269631 0.0435335448102876 2.91586804664786 0.00361569663350971 ** df.mm.trans1:probe27 -0.386488187615918 0.0435335448102876 -8.87793974279312 2.55612504024044e-18 *** df.mm.trans2:probe2 -0.0532453645750593 0.0435335448102876 -1.22308819112007 0.221546525773804 df.mm.trans2:probe3 -0.363252182554128 0.0435335448102876 -8.3441903051342 2.02988795543518e-16 *** df.mm.trans2:probe4 -0.204904925096873 0.0435335448102876 -4.70682840071528 2.82131893349338e-06 *** df.mm.trans2:probe5 -0.267453199074768 0.0435335448102876 -6.1436117881116 1.10921655968456e-09 *** df.mm.trans2:probe6 -0.262832914855002 0.0435335448102876 -6.037480200622 2.10841663536824e-09 *** df.mm.trans3:probe2 -0.0474225771038212 0.0435335448102876 -1.08933415164056 0.276234377410518 df.mm.trans3:probe3 -0.0751672317726009 0.0435335448102876 -1.72665084132634 0.0844984731584041 . df.mm.trans3:probe4 -0.00387731031794701 0.0435335448102876 -0.089064888578307 0.929045822198689 df.mm.trans3:probe5 0.0482680485030391 0.0435335448102876 1.10875529923841 0.267767174244699 df.mm.trans3:probe6 0.0373871986887970 0.0435335448102876 0.858813562086995 0.390622042281187 df.mm.trans3:probe7 -0.0332587750674496 0.0435335448102876 -0.763980402064342 0.445035364359273 df.mm.trans3:probe8 0.0430841420664873 0.0435335448102876 0.989676863077456 0.322539907256408 df.mm.trans3:probe9 0.0712158857359329 0.0435335448102876 1.63588529365758 0.102136757815371 df.mm.trans3:probe10 0.0651051529980941 0.0435335448102876 1.49551692337052 0.135053468201224 df.mm.trans3:probe11 0.40799300096549 0.0435335448102876 9.37192233583227 3.63591142791390e-20 *** df.mm.trans3:probe12 0.0291420935569152 0.0435335448102876 0.669416967626043 0.503363668829358 df.mm.trans3:probe13 0.0579170321076933 0.0435335448102876 1.33040009399847 0.183649779412871 df.mm.trans3:probe14 0.567360898411154 0.0435335448102876 13.0327291490648 2.56726378693100e-36 *** df.mm.trans3:probe15 -0.114970887624834 0.0435335448102876 -2.64097233813279 0.00837869253066967 ** df.mm.trans3:probe16 -0.0145435345311089 0.0435335448102876 -0.33407650570353 0.738382633152791 df.mm.trans3:probe17 -0.00943496870342617 0.0435335448102876 -0.216728702993112 0.828458151255843 df.mm.trans3:probe18 0.485135894137943 0.0435335448102876 11.1439556841073 1.83420945701711e-27 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.08990542004145 0.127997745390210 31.952948917757 6.109167615025e-161 *** df.mm.trans1 -0.0758935612801183 0.10999330718093 -0.689983447404482 0.490343568229051 df.mm.trans2 0.254490725234186 0.0949256685714532 2.68094740931557 0.00744623615951815 ** df.mm.exp2 0.0185882147813011 0.118806350399989 0.156458090991935 0.875699364449017 df.mm.exp3 0.0199289573842518 0.118806350399988 0.167743199897618 0.866814750963212 df.mm.exp4 -0.055541138886807 0.118806350399989 -0.467493014471155 0.640235604954265 df.mm.exp5 0.110194436534754 0.118806350399989 0.927513017307236 0.353854516798072 df.mm.exp6 0.177642330532962 0.118806350399989 1.49522588594708 0.135129373751606 df.mm.exp7 -0.112372178945298 0.118806350399989 -0.945843202547433 0.344426908139399 df.mm.exp8 -0.137469934053904 0.118806350399989 -1.15709247520086 0.247474446842600 df.mm.trans1:exp2 0.0368212953173861 0.10999330718093 0.334759416378108 0.737867517124008 df.mm.trans2:exp2 -0.0669415241505506 0.0710003744843365 -0.942833395411438 0.345963805637484 df.mm.trans1:exp3 -0.0510138859934435 0.10999330718093 -0.463790818740724 0.642885240700058 df.mm.trans2:exp3 0.0190305074188825 0.0710003744843365 0.268033902033585 0.788721207298874 df.mm.trans1:exp4 0.101052944458379 0.10999330718093 0.91871902980565 0.35843486766918 df.mm.trans2:exp4 -0.0985553496026782 0.0710003744843365 -1.38809619411825 0.165376134018182 df.mm.trans1:exp5 -0.0877270676363945 0.10999330718093 -0.797567323728985 0.425285980753599 df.mm.trans2:exp5 -0.124525934828062 0.0710003744843365 -1.75387715533154 0.0797174578640788 . df.mm.trans1:exp6 -0.179325701998001 0.109993307180930 -1.63033285018900 0.103304525872871 df.mm.trans2:exp6 -0.0811256508791138 0.0710003744843365 -1.14260877450739 0.253438472569135 df.mm.trans1:exp7 0.159809405857376 0.10999330718093 1.45290118056459 0.146523518701031 df.mm.trans2:exp7 -0.0388390254042155 0.0710003744843365 -0.547025641572973 0.584467061944735 df.mm.trans1:exp8 0.187857049081152 0.109993307180930 1.70789527013805 0.0879251926825861 . df.mm.trans2:exp8 0.0528189667751091 0.0710003744843365 0.743925185729289 0.457073441697135 df.mm.trans1:probe2 0.0544447855477614 0.0824949803856976 0.659976950030291 0.509400546942288 df.mm.trans1:probe3 0.157836188736265 0.0824949803856976 1.91328233546231 0.0559595806871881 . df.mm.trans1:probe4 0.0183996557183513 0.0824949803856976 0.223039700504509 0.823544148705088 df.mm.trans1:probe5 0.0519604858632816 0.0824949803856976 0.629862394297753 0.52890952109758 df.mm.trans1:probe6 0.122891337146797 0.0824949803856976 1.48968260338059 0.136581428604626 df.mm.trans1:probe7 0.145378809491331 0.0824949803856976 1.76227461127484 0.0782880776562816 . df.mm.trans1:probe8 0.118583441916003 0.0824949803856976 1.43746251422301 0.150858174217496 df.mm.trans1:probe9 0.0802167778462802 0.0824949803856976 0.972383743486382 0.331063799088348 df.mm.trans1:probe10 0.147769549452632 0.0824949803856976 1.79125504075216 0.073514807719604 . df.mm.trans1:probe11 0.0292561318834954 0.0824949803856976 0.354641358137320 0.722923197018422 df.mm.trans1:probe12 0.101197042645325 0.0824949803856976 1.22670545737677 0.220183970689783 df.mm.trans1:probe13 0.0147857285280745 0.0824949803856976 0.179231857004453 0.857787167878287 df.mm.trans1:probe14 0.0866138765457178 0.0824949803856976 1.04992905193459 0.293970936308348 df.mm.trans1:probe15 0.190713441426002 0.0824949803856976 2.31181873775033 0.0209633850349250 * df.mm.trans1:probe16 0.0473844612716431 0.0824949803856976 0.574392054523821 0.565814667816289 df.mm.trans1:probe17 0.0460341702105873 0.0824949803856976 0.558023894246158 0.576936493919182 df.mm.trans1:probe18 0.178754464544602 0.0824949803856976 2.16685262192744 0.0304505335276099 * df.mm.trans1:probe19 0.110497298409429 0.0824949803856976 1.33944268963771 0.18069078764646 df.mm.trans1:probe20 0.122044452220006 0.0824949803856976 1.47941670692446 0.139302368976216 df.mm.trans1:probe21 0.0627735436559787 0.0824949803856976 0.760937736605147 0.446849981574921 df.mm.trans1:probe22 0.109039157536085 0.0824949803856976 1.32176717936391 0.186508102176355 df.mm.trans1:probe23 0.140349954468069 0.0824949803856976 1.70131508380117 0.0891536858290882 . df.mm.trans1:probe24 0.0920368287482084 0.0824949803856976 1.1156658055787 0.264797880609634 df.mm.trans1:probe25 0.122288184007088 0.0824949803856976 1.48237121137966 0.138515039913078 df.mm.trans1:probe26 0.129623757671869 0.0824949803856976 1.57129266612132 0.116389282152734 df.mm.trans1:probe27 0.0119987642032304 0.0824949803856976 0.145448415735495 0.884382284898722 df.mm.trans2:probe2 -0.0960431803200554 0.0824949803856976 -1.16423059768018 0.244571623793476 df.mm.trans2:probe3 -0.221250011338124 0.0824949803856976 -2.68198150122214 0.00742340315514847 ** df.mm.trans2:probe4 -0.203799001420552 0.0824949803856975 -2.47044123736631 0.0136386071097083 * df.mm.trans2:probe5 -0.191919706127132 0.0824949803856976 -2.32644101774229 0.0201677986069489 * df.mm.trans2:probe6 -0.12489703780547 0.0824949803856976 -1.51399560581172 0.130301252095190 df.mm.trans3:probe2 -0.136963701877953 0.0824949803856976 -1.66026710034467 0.0971328721039251 . df.mm.trans3:probe3 -0.01757139063068 0.0824949803856976 -0.212999512800980 0.831365028278138 df.mm.trans3:probe4 -0.064397081748806 0.0824949803856976 -0.78061818364855 0.435187463030687 df.mm.trans3:probe5 -0.142596982632173 0.0824949803856976 -1.72855344610634 0.0841569885567513 . df.mm.trans3:probe6 -0.09262408169254 0.0824949803856976 -1.12278445621157 0.26176299175517 df.mm.trans3:probe7 -0.135012826237260 0.0824949803856976 -1.63661868402199 0.101983303641785 df.mm.trans3:probe8 -0.107874936928949 0.0824949803856976 -1.30765455576315 0.191251402228291 df.mm.trans3:probe9 -0.173346237346008 0.0824949803856975 -2.10129436403941 0.0358319183501344 * df.mm.trans3:probe10 -0.0863588566989178 0.0824949803856976 -1.04683771418764 0.29539402112047 df.mm.trans3:probe11 -0.111665131531334 0.0824949803856975 -1.35359910396068 0.176129826678808 df.mm.trans3:probe12 -0.166719904405303 0.0824949803856975 -2.02097028965665 0.0435137913783530 * df.mm.trans3:probe13 -0.173120543864876 0.0824949803856975 -2.098558519021 0.0360731220243634 * df.mm.trans3:probe14 -0.0603175298097005 0.0824949803856976 -0.731166060379571 0.464826416807973 df.mm.trans3:probe15 -0.0617506699075111 0.0824949803856976 -0.74853851251072 0.454288198664203 df.mm.trans3:probe16 -0.104177315199193 0.0824949803856976 -1.26283217126814 0.206905048564844 df.mm.trans3:probe17 -0.139119132399509 0.0824949803856976 -1.68639512063728 0.0919904847412341 . df.mm.trans3:probe18 -0.217657931615451 0.0824949803856976 -2.63843849162472 0.0084411786203116 **