fitVsDatCorrelation=0.868025447700229 cont.fitVsDatCorrelation=0.286340670694658 fstatistic=8584.4459130137,53,715 cont.fstatistic=2295.48995591737,53,715 residuals=-0.505224110611311,-0.124688739248364,0.00537545599942066,0.113806396546661,0.794238797974316 cont.residuals=-0.781354989883534,-0.238796580379816,-0.0605438674729708,0.188257710680194,1.20427857175854 predictedValues: Include Exclude Both Lung 107.378129834406 71.1072932552451 93.6582591285437 cerebhem 56.5146150033842 82.8153711723572 69.4255972929245 cortex 62.801092560597 89.9524833798101 74.6166716425429 heart 146.007520923163 81.4131711469402 127.462375833866 kidney 83.3245075873987 80.7082032440636 85.6306349697743 liver 61.819915523538 72.0295271801932 71.345213215487 stomach 110.639447106772 86.6893235873223 104.382599464626 testicle 80.7513869550627 77.95196848424 79.9604019442178 diffExp=36.2708365791611,-26.3007561689731,-27.1513908192132,64.5943497762223,2.61630434333513,-10.2096116566551,23.95012351945,2.79941847082273 diffExpScore=2.86954083903792 diffExp1.5=1,0,0,1,0,0,0,0 diffExp1.5Score=0.666666666666667 diffExp1.4=1,-1,-1,1,0,0,0,0 diffExp1.4Score=4 diffExp1.3=1,-1,-1,1,0,0,0,0 diffExp1.3Score=4 diffExp1.2=1,-1,-1,1,0,0,1,0 diffExp1.2Score=2.5 cont.predictedValues: Include Exclude Both Lung 89.0276761159726 88.4798339977092 104.286485310010 cerebhem 85.2778410267461 79.9179356993717 109.753728085880 cortex 93.4678087183022 80.7353050428885 86.6338709113655 heart 89.161145041227 103.423593857140 75.4760560780854 kidney 87.8311809242842 103.357487368046 84.790833386765 liver 88.466931353158 88.3421694490125 104.475606340422 stomach 89.2172073596327 77.9184054626251 82.9753598355768 testicle 86.6588052413844 83.5358045870066 89.9179066861761 cont.diffExp=0.54784211826339,5.35990532737442,12.7325036754137,-14.2624488159127,-15.5263064437622,0.124761904145558,11.2988018970075,3.12300065437788 cont.diffExpScore=14.3189420559238 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,0,0,0,0,0,0,0 cont.diffExp1.3Score=0 cont.diffExp1.2=0,0,0,0,0,0,0,0 cont.diffExp1.2Score=0 tran.correlation=-0.0424348666171142 cont.tran.correlation=-0.0540543337437603 tran.covariance=-0.00169343086195745 cont.tran.covariance=-0.000139564090017583 tran.mean=84.4939973090308 cont.tran.mean=88.4261957027817 weightedLogRatios: wLogRatio Lung 1.84249740096321 cerebhem -1.61464601780042 cortex -1.55208128672604 heart 2.74046099138346 kidney 0.140587635812076 liver -0.642071853898709 stomach 1.11832235132343 testicle 0.154315349024251 cont.weightedLogRatios: wLogRatio Lung 0.0276895482375751 cerebhem 0.286496676345999 cortex 0.653771229828013 heart -0.677336616218029 kidney -0.741743786758273 liver 0.00632516496320848 stomach 0.598975936080653 testicle 0.163095739073240 varWeightedLogRatios=2.43276557877172 cont.varWeightedLogRatios=0.270294596284383 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.2139625378206 0.089660520569538 46.9990862316306 7.36875141047708e-221 *** df.mm.trans1 0.218577075367268 0.0782908017482364 2.79186150207220 0.00538049070639067 ** df.mm.trans2 0.0610705879620387 0.0705286050451143 0.865898140520067 0.386836475543524 df.mm.exp2 -0.190036493960851 0.0931425183197243 -2.04027652879778 0.0416897058181818 * df.mm.exp3 -0.0740037445043585 0.0931425183197244 -0.79452161955006 0.427155460927867 df.mm.exp4 0.134480150576944 0.0931425183197243 1.44381054971397 0.149230281513758 df.mm.exp5 -0.0373539894820611 0.0931425183197243 -0.401041223234253 0.688509591665866 df.mm.exp6 -0.267122369052833 0.0931425183197244 -2.86788862778972 0.00425389730855977 ** df.mm.exp7 0.119650613496746 0.0931425183197244 1.28459714913472 0.199349123843716 df.mm.exp8 -0.0349573712627133 0.0931425183197244 -0.375310565929916 0.707540816526406 df.mm.trans1:exp2 -0.451820757222506 0.0868558461847544 -5.20196137703178 2.57819284261899e-07 *** df.mm.trans2:exp2 0.342460271322817 0.0700254218888064 4.890513503319 1.24304694595318e-06 *** df.mm.trans1:exp3 -0.462380313223113 0.0868558461847544 -5.32353702754293 1.36385324045928e-07 *** df.mm.trans2:exp3 0.309095403988725 0.0700254218888064 4.41404558018284 1.17119882934634e-05 *** df.mm.trans1:exp4 0.172821454464953 0.0868558461847544 1.98975039742676 0.046998924556133 * df.mm.trans2:exp4 0.000867008065964754 0.0700254218888063 0.0123813329870612 0.990124831774194 df.mm.trans1:exp5 -0.216259824395794 0.0868558461847544 -2.4898706753231 0.0130050563726221 * df.mm.trans2:exp5 0.164004301717381 0.0700254218888064 2.34206802749156 0.0194507305354957 * df.mm.trans1:exp6 -0.285008589246967 0.0868558461847544 -3.28139787666928 0.00108309553376037 ** df.mm.trans2:exp6 0.280008594747787 0.0700254218888064 3.99867058555411 7.03217772474034e-05 *** df.mm.trans1:exp7 -0.0897304518920492 0.0868558461847545 -1.03309628348079 0.301908145245875 df.mm.trans2:exp7 0.0784902117143152 0.0700254218888064 1.12088166835967 0.262714561880137 df.mm.trans1:exp8 -0.250024019379963 0.0868558461847545 -2.87860898675867 0.00411357781370835 ** df.mm.trans2:exp8 0.126860310634907 0.0700254218888064 1.81163222174297 0.0704624905181131 . df.mm.trans1:probe2 0.152277566763447 0.0531881260825774 2.8629992815883 0.00431932723041238 ** df.mm.trans1:probe3 0.237970166345857 0.0531881260825774 4.4741220244608 8.9241375198912e-06 *** df.mm.trans1:probe4 0.56554221736232 0.0531881260825774 10.6328659987811 1.29117359505050e-24 *** df.mm.trans1:probe5 0.382926766393927 0.0531881260825774 7.19947842868938 1.53347081040624e-12 *** df.mm.trans1:probe6 0.230671367988903 0.0531881260825774 4.33689593859301 1.65281189145485e-05 *** df.mm.trans1:probe7 0.0810618654057747 0.0531881260825774 1.5240594353695 0.127936026686245 df.mm.trans1:probe8 0.319232202910403 0.0531881260825774 6.00194491557717 3.09876597799235e-09 *** df.mm.trans1:probe9 0.474635566780038 0.0531881260825774 8.9237128986861 3.74812462296113e-18 *** df.mm.trans1:probe10 0.324876091522842 0.0531881260825774 6.10805673090371 1.65534996479237e-09 *** df.mm.trans1:probe11 0.320037872789689 0.0531881260825774 6.01709246708209 2.83509377920285e-09 *** df.mm.trans1:probe12 0.457964461113757 0.0531881260825774 8.61027629367395 4.62369482905244e-17 *** df.mm.trans1:probe13 0.319427085601747 0.0531881260825774 6.00560894184954 3.0328737394078e-09 *** df.mm.trans1:probe14 0.297681250482791 0.0531881260825774 5.59676139032658 3.11320667657633e-08 *** df.mm.trans1:probe15 0.261797193303673 0.0531881260825774 4.92209845665965 1.06382111075634e-06 *** df.mm.trans1:probe16 0.243773975875599 0.0531881260825774 4.58324054314542 5.40255050737446e-06 *** df.mm.trans1:probe17 0.299841560275817 0.0531881260825774 5.63737778259563 2.48587117794074e-08 *** df.mm.trans1:probe18 0.443451079367232 0.0531881260825774 8.33740746343932 3.88925559057001e-16 *** df.mm.trans1:probe19 0.532513144537875 0.0531881260825774 10.0118801649661 3.59603275186631e-22 *** df.mm.trans1:probe20 0.393558363606356 0.0531881260825774 7.39936509504652 3.84864100315974e-13 *** df.mm.trans2:probe2 0.0579891976112915 0.0531881260825774 1.09026585221785 0.275963343949790 df.mm.trans2:probe3 -0.00808387918569538 0.0531881260825774 -0.151986538746350 0.879240427797223 df.mm.trans2:probe4 -0.129687498809329 0.0531881260825774 -2.43827914914661 0.0149998263915995 * df.mm.trans2:probe5 -0.0367886622679286 0.0531881260825774 -0.691670584724347 0.489368750601643 df.mm.trans2:probe6 -0.0135477590028585 0.0531881260825774 -0.254713974728587 0.799017263705887 df.mm.trans3:probe2 0.200637928255096 0.0531881260825774 3.77223156806832 0.000175182790547798 *** df.mm.trans3:probe3 -0.148152560133774 0.0531881260825774 -2.78544425317333 0.00548696537304918 ** df.mm.trans3:probe4 0.50510775299142 0.0531881260825774 9.49662622456775 3.17590811953743e-20 *** df.mm.trans3:probe5 0.00838152988209522 0.0531881260825774 0.157582725683594 0.874830106738018 df.mm.trans3:probe6 -0.289720159233497 0.0531881260825774 -5.44708341075395 7.048489956173e-08 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.34233899528531 0.173016784932197 25.0977903501502 3.51967927174699e-100 *** df.mm.trans1 0.224147478133873 0.151076780752553 1.48366596784321 0.138338222591965 df.mm.trans2 0.14176832857648 0.136098166875960 1.04166229296599 0.297920360525151 df.mm.exp2 -0.195904244204019 0.179735952432581 -1.08995580212313 0.276099811241736 df.mm.exp3 0.142522019549159 0.179735952432581 0.792952203608895 0.428068708455671 df.mm.exp4 0.480882827383806 0.179735952432581 2.67549603112479 0.0076326200506112 ** df.mm.exp5 0.34884269136586 0.179735952432581 1.94086206262328 0.0526676862681081 . df.mm.exp6 -0.00968739519213534 0.179735952432581 -0.0538979267142953 0.95703154413634 df.mm.exp7 0.103612257519516 0.179735952432581 0.576469293523122 0.564479443233976 df.mm.exp8 0.0637766885800346 0.179735952432581 0.354835455660754 0.722817500293393 df.mm.trans1:exp2 0.152871599023654 0.167604639857034 0.912096461971772 0.362025359244919 df.mm.trans2:exp2 0.0941298870071108 0.135127180633816 0.696602168161823 0.486278196953804 df.mm.trans1:exp3 -0.0938522233063415 0.167604639857034 -0.559961963979021 0.575680767605967 df.mm.trans2:exp3 -0.234120716516122 0.135127180633816 -1.73259528851246 0.083598832914237 . df.mm.trans1:exp4 -0.479384765391494 0.167604639857034 -2.86021178053547 0.00435703792857457 ** df.mm.trans2:exp4 -0.324824372518294 0.135127180633816 -2.40384185472308 0.0164773023465017 * df.mm.trans1:exp5 -0.362373406945629 0.167604639857034 -2.16207264461611 0.0309436116268369 * df.mm.trans2:exp5 -0.193423622762900 0.135127180633816 -1.43141906650937 0.152747092108981 df.mm.trans1:exp6 0.00336893136543906 0.167604639857034 0.0201004660032845 0.98396883619509 df.mm.trans2:exp6 0.00813029738951093 0.135127180633816 0.0601677423548366 0.95203885000559 df.mm.trans1:exp7 -0.101485617905571 0.167604639857034 -0.605506016970279 0.545034972123352 df.mm.trans2:exp7 -0.230724723786143 0.135127180633816 -1.70746346296818 0.0881700625326024 . df.mm.trans1:exp8 -0.0907453480870971 0.167604639857034 -0.54142503551514 0.588383312505086 df.mm.trans2:exp8 -0.121276012797574 0.135127180633816 -0.897495324247326 0.369756767703653 df.mm.trans1:probe2 -0.0157934072586905 0.102636461543169 -0.153877160428488 0.87775001322201 df.mm.trans1:probe3 -0.0770331262099443 0.102636461543169 -0.75054347209295 0.453174369786664 df.mm.trans1:probe4 -0.173703756264021 0.102636461543169 -1.69241762286360 0.0910020385295876 . df.mm.trans1:probe5 -0.262267838820703 0.102636461543169 -2.55530865812627 0.0108152314160022 * df.mm.trans1:probe6 -0.194833581219116 0.102636461543169 -1.89828817449216 0.0580605604767494 . df.mm.trans1:probe7 -0.0650350199044801 0.102636461543169 -0.63364440790982 0.52651555081172 df.mm.trans1:probe8 -0.0615384673626635 0.102636461543169 -0.599577055146047 0.54897808818984 df.mm.trans1:probe9 -0.137311752937219 0.102636461543169 -1.33784574090628 0.181372076469428 df.mm.trans1:probe10 -0.0407273571572908 0.102636461543169 -0.396811781553488 0.691624671450682 df.mm.trans1:probe11 -0.0833838119824314 0.102636461543169 -0.812419005183264 0.416821650763524 df.mm.trans1:probe12 -0.0689967412439728 0.102636461543169 -0.672243958984819 0.501645569076813 df.mm.trans1:probe13 -0.103969543758065 0.102636461543169 -1.01298838828670 0.311408373496672 df.mm.trans1:probe14 -0.196818792187634 0.102636461543169 -1.9176303355397 0.0555560042850547 . df.mm.trans1:probe15 -0.0633446895446708 0.102636461543169 -0.617175305853936 0.537315586403989 df.mm.trans1:probe16 0.00497631083108098 0.102636461543169 0.0484848245570894 0.961343398288314 df.mm.trans1:probe17 -0.0712548225323561 0.102636461543169 -0.694244730001595 0.487754249252423 df.mm.trans1:probe18 -0.143189787784259 0.102636461543169 -1.39511617637007 0.163413997477605 df.mm.trans1:probe19 -0.0467625593041717 0.102636461543169 -0.455613517857915 0.648806252271263 df.mm.trans1:probe20 -0.215030050597811 0.102636461543169 -2.09506492492797 0.0365164732471047 * df.mm.trans2:probe2 -0.0115001330811932 0.102636461543169 -0.112047248202885 0.910817391600116 df.mm.trans2:probe3 0.120824870931095 0.102636461543169 1.17721196848038 0.239502632850517 df.mm.trans2:probe4 -0.0418271852680419 0.102636461543169 -0.407527545661241 0.683742552602355 df.mm.trans2:probe5 -0.00073592272129664 0.102636461543169 -0.00717018796470408 0.994281066788584 df.mm.trans2:probe6 -0.0827535768079278 0.102636461543169 -0.80627854432727 0.420350343984220 df.mm.trans3:probe2 -0.0749535483787733 0.102636461543169 -0.730281882791215 0.465457104347508 df.mm.trans3:probe3 -0.0368110680055243 0.102636461543169 -0.358654882018138 0.719959158042549 df.mm.trans3:probe4 -0.179254625071883 0.102636461543169 -1.74650043831148 0.081153448835856 . df.mm.trans3:probe5 -0.0106297340617279 0.102636461543169 -0.103566840690986 0.91754214513743 df.mm.trans3:probe6 -0.0650291657953318 0.102636461543169 -0.633587370585459 0.526552761869974