chr15.8142_chr15_102073546_102076694_+_0.R fitVsDatCorrelation=0.687513690685145 cont.fitVsDatCorrelation=0.311217183146426 fstatistic=5236.99821748001,40,416 cont.fstatistic=3053.43509826786,40,416 residuals=-0.480272074386977,-0.101527773566486,-0.00133162329452496,0.0724432019201075,1.78608659367671 cont.residuals=-0.583900730751498,-0.145241258815096,-0.0183635060023832,0.0895835833758005,2.03110133118939 predictedValues: Include Exclude Both chr15.8142_chr15_102073546_102076694_+_0.R.tl.Lung 58.8027443985179 56.6637673632204 60.6538157552781 chr15.8142_chr15_102073546_102076694_+_0.R.tl.cerebhem 62.1603107569826 79.438647573684 71.398829604824 chr15.8142_chr15_102073546_102076694_+_0.R.tl.cortex 57.1667068102826 54.0636127270506 56.2101933012817 chr15.8142_chr15_102073546_102076694_+_0.R.tl.heart 56.0184394987627 51.9311066388679 57.9446313105611 chr15.8142_chr15_102073546_102076694_+_0.R.tl.kidney 58.9720832619471 58.613067862682 63.931509419072 chr15.8142_chr15_102073546_102076694_+_0.R.tl.liver 56.7258657906681 54.9808202507276 64.5310845151809 chr15.8142_chr15_102073546_102076694_+_0.R.tl.stomach 79.4842616764476 59.5474360525731 62.957876865333 chr15.8142_chr15_102073546_102076694_+_0.R.tl.testicle 61.7851320919461 55.5014493298462 63.5296994603036 diffExp=2.13897703529754,-17.2783368167013,3.10309408323195,4.08733285989478,0.359015399265104,1.74504553994053,19.9368256238746,6.28368276209985 diffExpScore=2.56985611417761 diffExp1.5=0,0,0,0,0,0,0,0 diffExp1.5Score=0 diffExp1.4=0,0,0,0,0,0,0,0 diffExp1.4Score=0 diffExp1.3=0,0,0,0,0,0,1,0 diffExp1.3Score=0.5 diffExp1.2=0,-1,0,0,0,0,1,0 diffExp1.2Score=2 cont.predictedValues: Include Exclude Both Lung 66.5647594765307 68.6997046503763 59.7665853107335 cerebhem 81.2596551254031 61.3595730700766 60.0211917433407 cortex 62.3423601271536 63.7063740925933 62.770220762949 heart 64.3919146029383 58.0695870985856 59.1704366918145 kidney 67.455001976142 61.0160086406375 63.5604510366053 liver 62.810974292641 57.5586028447258 59.560887949653 stomach 68.6269301042173 65.9242270087378 64.9895208862201 testicle 68.7555326911069 66.2388842950373 60.7825931221587 cont.diffExp=-2.13494517384562,19.9000820553265,-1.36401396543978,6.32232750435267,6.43899333550449,5.25237144791523,2.70270309547946,2.51664839606958 cont.diffExpScore=1.14760775884830 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,1,0,0,0,0,0,0 cont.diffExp1.3Score=0.5 cont.diffExp1.2=0,1,0,0,0,0,0,0 cont.diffExp1.2Score=0.5 tran.correlation=0.234516615533261 cont.tran.correlation=0.102135538488785 tran.covariance=0.00438201897179424 cont.tran.covariance=0.000726545229583347 tran.mean=60.1159657552629 cont.tran.mean=65.2987556310564 weightedLogRatios: wLogRatio Lung 0.150276642770518 cerebhem -1.04296682039461 cortex 0.224249552110131 heart 0.302127431546537 kidney 0.0248779235820933 liver 0.125689953920445 stomach 1.22190068201730 testicle 0.436526088657073 cont.weightedLogRatios: wLogRatio Lung -0.133033033025275 cerebhem 1.19584098826939 cortex -0.0896789942156354 heart 0.425094686746988 kidney 0.417480073881873 liver 0.357728868570335 stomach 0.169097234803812 testicle 0.15706028680938 varWeightedLogRatios=0.384539808631685 cont.varWeightedLogRatios=0.173001256415921 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 3.52116101466848 0.0992396546945394 35.4813912392848 6.82247204745621e-128 *** df.mm.trans1 0.509714611335894 0.0804939890853716 6.33233135949186 6.26824192251552e-10 *** df.mm.trans2 0.475290160534982 0.0804939890853716 5.9046664966609 7.34613612136538e-09 *** df.mm.exp2 0.230279260930382 0.108847739768916 2.11560902798041 0.0349717860657891 * df.mm.exp3 0.00089396855819691 0.108847739768916 0.00821301903093997 0.993450969658723 df.mm.exp4 -0.09003000328039 0.108847739768916 -0.827118720806915 0.408643958617392 df.mm.exp5 -0.0159314677233699 0.108847739768916 -0.146364708694847 0.883704385234473 df.mm.exp6 -0.128073305375643 0.108847739768916 -1.17662806455644 0.240016818821811 df.mm.exp7 0.313725431256725 0.108847739768916 2.882241118858 0.00415319804945071 ** df.mm.exp8 -0.0175765780421181 0.108847739768916 -0.161478576215117 0.871794878084018 df.mm.trans1:exp2 -0.174751082835121 0.0877558533336728 -1.99133250030249 0.0470978941646604 * df.mm.trans2:exp2 0.107570751266407 0.0877558533336729 1.22579574102472 0.220969025988855 df.mm.trans1:exp3 -0.0291108156594638 0.0877558533336728 -0.331725059396051 0.74026393413757 df.mm.trans2:exp3 -0.0478675847382032 0.0877558533336729 -0.54546315624323 0.58572735692685 df.mm.trans1:exp4 0.041522389319871 0.0877558533336728 0.473158060032657 0.636348592280148 df.mm.trans2:exp4 0.00281298821830601 0.0877558533336729 0.0320547075943781 0.974443796353919 df.mm.trans1:exp5 0.0188071073398457 0.0877558533336728 0.214311713981468 0.830408992754707 df.mm.trans2:exp5 0.0497541576201965 0.0877558533336729 0.566961128290975 0.571046376251688 df.mm.trans1:exp6 0.0921150716124702 0.0877558533336729 1.04967438766987 0.294477254739007 df.mm.trans2:exp6 0.0979227241814093 0.0877558533336729 1.11585404803802 0.265128756910134 df.mm.trans1:exp7 -0.0123549227879442 0.0877558533336728 -0.140787449709676 0.88810600359638 df.mm.trans2:exp7 -0.264087174649491 0.0877558533336729 -3.00933971487185 0.00277740513228745 ** df.mm.trans1:exp8 0.0670508052654399 0.0877558533336728 0.76406077450462 0.445264169876989 df.mm.trans2:exp8 -0.00314927038993173 0.0877558533336729 -0.0358867274409298 0.97138989250689 df.mm.trans1:probe2 0.085168793653384 0.0557678715199033 1.52720179795615 0.127470778210013 df.mm.trans1:probe3 0.123214515671840 0.0557678715199033 2.20941757886287 0.0276897111228268 * df.mm.trans1:probe4 0.0764441739235391 0.0557678715199033 1.37075652773042 0.171189979310724 df.mm.trans1:probe5 0.208873723933009 0.0557678715199033 3.74541323239246 0.000205484482069465 *** df.mm.trans1:probe6 0.0693665091360934 0.0557678715199033 1.24384358315230 0.21425757153549 df.mm.trans2:probe2 0.00931856433953585 0.0557678715199033 0.167095571080028 0.867376043108176 df.mm.trans2:probe3 0.0269598177422241 0.0557678715199033 0.483429204082179 0.629045361162187 df.mm.trans2:probe4 0.192000172262610 0.0557678715199033 3.44284562114023 0.000633982421197316 *** df.mm.trans2:probe5 0.00956807203192625 0.0557678715199033 0.171569611160638 0.863859325823787 df.mm.trans2:probe6 0.29104287361056 0.0557678715199033 5.21882699981992 2.84798715888082e-07 *** df.mm.trans3:probe2 -0.288247620794832 0.0557678715199033 -5.16870400355798 3.66761453786684e-07 *** df.mm.trans3:probe3 -0.357122776976715 0.0557678715199033 -6.40373690520462 4.10189216522425e-10 *** df.mm.trans3:probe4 -0.519793105391384 0.0557678715199033 -9.3206552666417 6.86068511877781e-19 *** df.mm.trans3:probe5 -0.419416765747514 0.0557678715199033 -7.52075979083809 3.3867507685815e-13 *** df.mm.trans3:probe6 -0.652838016396512 0.0557678715199033 -11.7063462994731 1.48005989268800e-27 *** df.mm.trans3:probe7 -0.569464386146969 0.0557678715199033 -10.2113344229702 5.40387051842199e-22 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.3728912414583 0.129874701587422 33.6700772976543 7.26177168337754e-121 *** df.mm.trans1 -0.123986527608893 0.105342293302227 -1.17698716937153 0.239873614535518 df.mm.trans2 -0.148475254159543 0.105342293302227 -1.40945530522644 0.159447690414009 df.mm.exp2 0.0822296802262707 0.142448779819578 0.577257877044793 0.564077532161528 df.mm.exp3 -0.190028484837708 0.142448779819578 -1.33401272428163 0.182929523066008 df.mm.exp4 -0.191265362314183 0.142448779819578 -1.34269568722481 0.180102706040548 df.mm.exp5 -0.166867903112497 0.142448779819578 -1.17142388530002 0.242098939460703 df.mm.exp6 -0.231539169300807 0.142448779819578 -1.62542051672236 0.104830295724526 df.mm.exp7 -0.0945084779883775 0.142448779819578 -0.663455861875964 0.507406124783324 df.mm.exp8 -0.0209520451661209 0.142448779819578 -0.147084764029978 0.88313637123897 df.mm.trans1:exp2 0.117244665721295 0.114845877883607 1.02088701729565 0.30790128819181 df.mm.trans2:exp2 -0.195223381078221 0.114845877883607 -1.69987277450284 0.0899023435160736 . df.mm.trans1:exp3 0.124494316898710 0.114845877883607 1.08401206201656 0.278987302448396 df.mm.trans2:exp3 0.114568206559764 0.114845877883607 0.997582226467685 0.319061887250776 df.mm.trans1:exp4 0.158078137383726 0.114845877883607 1.37643718953443 0.169426722167138 df.mm.trans2:exp4 0.0231625311665859 0.114845877883607 0.201683609315613 0.84026266094341 df.mm.trans1:exp5 0.18015334078405 0.114845877883607 1.56865308623990 0.117489090168109 df.mm.trans2:exp5 0.0482592694891717 0.114845877883607 0.42020898249462 0.674549752365956 df.mm.trans1:exp6 0.173493676875863 0.114845877883607 1.51066525044716 0.131632953094150 df.mm.trans2:exp6 0.0545978779032558 0.114845877883607 0.475401284829651 0.634750498550433 df.mm.trans1:exp7 0.125018202287841 0.114845877883607 1.08857370061244 0.276972154572373 df.mm.trans2:exp7 0.0532695847480432 0.114845877883607 0.463835409069105 0.643008279324369 df.mm.trans1:exp8 0.0533339534668959 0.114845877883607 0.464395888208965 0.642607076507878 df.mm.trans2:exp8 -0.0155251883686501 0.114845877883607 -0.135182808950135 0.89253272290441 df.mm.trans1:probe2 -0.144249577604901 0.0729832816741117 -1.97647425952989 0.0487611809325656 * df.mm.trans1:probe3 -0.176085865302580 0.0729832816741117 -2.41268769043364 0.0162670522627612 * df.mm.trans1:probe4 -0.167090264566624 0.0729832816741117 -2.28943205531266 0.0225543900026353 * df.mm.trans1:probe5 -0.0918424196178784 0.0729832816741117 -1.25840353449681 0.208951650995019 df.mm.trans1:probe6 -0.080214246256117 0.0729832816741117 -1.09907699977501 0.272370141978218 df.mm.trans2:probe2 0.00198749827440251 0.0729832816741117 0.0272322404366136 0.978287559789174 df.mm.trans2:probe3 -0.0197693341102790 0.0729832816741117 -0.270874831287443 0.786621652491511 df.mm.trans2:probe4 0.084787235115346 0.0729832816741117 1.16173503260571 0.246009219071233 df.mm.trans2:probe5 0.0367216436831136 0.0729832816741117 0.503151445656895 0.615124090233643 df.mm.trans2:probe6 -0.0344511765736626 0.0729832816741117 -0.472042031865538 0.637144294656229 df.mm.trans3:probe2 -0.0228001442823509 0.0729832816741117 -0.312402289392235 0.75489134497635 df.mm.trans3:probe3 -0.0717373718270051 0.0729832816741117 -0.982928832212973 0.326213774636598 df.mm.trans3:probe4 0.0191422580582921 0.0729832816741117 0.262282780647861 0.793233266189985 df.mm.trans3:probe5 0.0880490308922322 0.0729832816741117 1.20642740189997 0.228338366552805 df.mm.trans3:probe6 -0.0471686471694258 0.0729832816741117 -0.64629386466952 0.518445438692582 df.mm.trans3:probe7 -0.0353642284875544 0.0729832816741117 -0.484552457444491 0.62824886674435