fitVsDatCorrelation=0.907669489170286 cont.fitVsDatCorrelation=0.266209715454581 fstatistic=7515.81154471342,50,646 cont.fstatistic=1414.30546151043,50,646 residuals=-0.766426850611743,-0.110206978922339,-0.00785695934002491,0.109086026871195,0.732733837872535 cont.residuals=-0.772803827052693,-0.336533145166203,-0.0483749955345259,0.322137309377695,1.36905723545630 predictedValues: Include Exclude Both Lung 75.2274299926195 46.4521455338266 91.4036437591885 cerebhem 86.5085481212635 46.5420445178782 94.9206224764944 cortex 77.0195682147499 44.7604220973833 103.047308930578 heart 74.9635397895064 46.543600884096 88.2399599079971 kidney 82.896153598635 45.8616342493537 100.852472014187 liver 71.1255655168463 48.3316077934977 69.2299272149593 stomach 78.8143617904465 44.3885189809561 75.4699691790295 testicle 73.338639339429 44.6426889693822 76.2278374273486 diffExp=28.7752844587929,39.9665036033853,32.2591461173666,28.4199389054104,37.0345193492813,22.7939577233485,34.4258428094904,28.6959503700469 diffExpScore=0.996053220635826 diffExp1.5=1,1,1,1,1,0,1,1 diffExp1.5Score=0.875 diffExp1.4=1,1,1,1,1,1,1,1 diffExp1.4Score=0.888888888888889 diffExp1.3=1,1,1,1,1,1,1,1 diffExp1.3Score=0.888888888888889 diffExp1.2=1,1,1,1,1,1,1,1 diffExp1.2Score=0.888888888888889 cont.predictedValues: Include Exclude Both Lung 78.8098154478345 68.6330094196295 82.3368086753849 cerebhem 73.1453175314505 90.5291520814636 82.1430663956079 cortex 79.3916579188108 68.720545961037 73.1079576033046 heart 74.2556253431125 72.395127650341 76.8696873217914 kidney 77.0675377803659 80.9675613874744 79.9029207825256 liver 77.4089394621768 89.1563203434505 73.7701716215 stomach 81.3713066163907 68.7828563565099 80.740161587863 testicle 65.512825277619 63.6761205971987 76.2773980165095 cont.diffExp=10.1768060282050,-17.3838345500131,10.6711119577737,1.86049769277159,-3.90002360710851,-11.7473808812737,12.5884502598808,1.83670468042039 cont.diffExpScore=13.7515189964238 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,0,0,0,0,0,0,0 cont.diffExp1.3Score=0 cont.diffExp1.2=0,-1,0,0,0,0,0,0 cont.diffExp1.2Score=0.5 tran.correlation=-0.191422547976073 cont.tran.correlation=0.0932388639564616 tran.covariance=-0.000377732409724474 cont.tran.covariance=0.00130401979375563 tran.mean=61.7135293368669 cont.tran.mean=75.613982448429 weightedLogRatios: wLogRatio Lung 1.96668469223358 cerebhem 2.57271740260464 cortex 2.21039329760455 heart 1.94395666777766 kidney 2.43982650990048 liver 1.57297888921259 stomach 2.34240852098340 testicle 2.00886382864642 cont.weightedLogRatios: wLogRatio Lung 0.594245379428315 cerebhem -0.937984327385017 cortex 0.621004384268015 heart 0.108979230328162 kidney -0.215700041207795 liver -0.624461451305236 stomach 0.725212281390833 testicle 0.118523329165092 varWeightedLogRatios=0.104251770031359 cont.varWeightedLogRatios=0.369704213754742 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 3.18819306708973 0.0907384667428655 35.1360694260398 5.00350023655723e-152 *** df.mm.trans1 1.06291531579666 0.0788049981448135 13.4879175283201 1.04124350498018e-36 *** df.mm.trans2 0.583341761860208 0.071612537174325 8.14580497881524 1.95021970530249e-15 *** df.mm.exp2 0.103905093440211 0.0948271319411638 1.09573168895037 0.273604537825807 df.mm.exp3 -0.133457592542069 0.0948271319411637 -1.40737771785478 0.159796377893732 df.mm.exp4 0.0336782296733081 0.0948271319411638 0.355153941534412 0.722590191202254 df.mm.exp5 -0.0140944361217668 0.0948271319411637 -0.148632947482918 0.881889657615092 df.mm.exp6 0.261446116775747 0.0948271319411637 2.75708134817325 0.00599674418295067 ** df.mm.exp7 0.192688037442078 0.0948271319411637 2.03199267443450 0.0425630673286761 * df.mm.exp8 0.116398210555777 0.0948271319411638 1.22747791874585 0.220090118628666 df.mm.trans1:exp2 0.0358222128391743 0.0874262958689138 0.409741857219775 0.682131154889737 df.mm.trans2:exp2 -0.101971660566472 0.0719062330226487 -1.41811990810802 0.156637958029078 df.mm.trans1:exp3 0.157001189781613 0.0874262958689138 1.79581198335361 0.0729916199635397 . df.mm.trans2:exp3 0.0963592518054012 0.0719062330226487 1.34006813811329 0.180694340488187 df.mm.trans1:exp4 -0.0371922954663896 0.0874262958689138 -0.425413144829508 0.670677203631352 df.mm.trans2:exp4 -0.0317113573533217 0.0719062330226487 -0.44100985436594 0.659353415358163 df.mm.trans1:exp5 0.111167174113168 0.0874262958689138 1.27155306087600 0.203989565072145 df.mm.trans2:exp5 0.00130069416030243 0.0719062330226487 0.0180887540012386 0.985573634747371 df.mm.trans1:exp6 -0.317515198320139 0.0874262958689138 -3.63180431201407 0.000303759861486971 *** df.mm.trans2:exp6 -0.221783018857131 0.0719062330226487 -3.08433649677177 0.00212712762482949 ** df.mm.trans1:exp7 -0.146108725947946 0.0874262958689137 -1.67122173592966 0.0951622032714582 . df.mm.trans2:exp7 -0.238129837324233 0.0719062330226487 -3.31167170513894 0.000979081666026106 *** df.mm.trans1:exp8 -0.141826525847412 0.0874262958689138 -1.62224104816320 0.105239647768488 df.mm.trans2:exp8 -0.156130311899944 0.0719062330226487 -2.17130428527339 0.030271458788312 * df.mm.trans1:probe2 0.328308619323813 0.0535374537451079 6.13231665605339 1.50850933369948e-09 *** df.mm.trans1:probe3 0.531688649362933 0.0535374537451079 9.93115309320284 1.00015606369631e-21 *** df.mm.trans1:probe4 0.214969628485578 0.0535374537451079 4.01531289681892 6.63379393396975e-05 *** df.mm.trans1:probe5 0.338739180677831 0.0535374537451079 6.32714402688201 4.66791707552072e-10 *** df.mm.trans1:probe6 -0.436280762606559 0.0535374537451079 -8.14907568603644 1.90298641041561e-15 *** df.mm.trans1:probe7 -0.344593536110163 0.0535374537451079 -6.43649467811402 2.38423866067460e-10 *** df.mm.trans1:probe8 -0.369500969533011 0.0535374537451079 -6.90172848511262 1.22921278280121e-11 *** df.mm.trans1:probe9 -0.399823211344384 0.0535374537451079 -7.46810285838292 2.64710409735745e-13 *** df.mm.trans1:probe10 -0.367291609898076 0.0535374537451079 -6.86046093351307 1.61011507242920e-11 *** df.mm.trans1:probe11 -0.432852971894721 0.0535374537451079 -8.08504965431372 3.07087590024714e-15 *** df.mm.trans1:probe12 0.51910659844138 0.0535374537451079 9.69613909755307 7.59592548839703e-21 *** df.mm.trans1:probe13 0.379286662327293 0.0535374537451079 7.08451067047526 3.6596975044194e-12 *** df.mm.trans1:probe14 0.365829131019038 0.0535374537451079 6.83314400346256 1.92370048935135e-11 *** df.mm.trans1:probe15 0.309255253777292 0.0535374537451079 5.77642812916837 1.18648638935137e-08 *** df.mm.trans1:probe16 0.308397816204221 0.0535374537451079 5.76041247072572 1.29868267833169e-08 *** df.mm.trans1:probe17 0.651134990081524 0.0535374537451079 12.1622330636339 8.62744508202207e-31 *** df.mm.trans2:probe2 0.163503444580145 0.0535374537451079 3.05400113644899 0.00235100049109109 ** df.mm.trans2:probe3 0.0547074520542866 0.0535374537451079 1.02185382806491 0.30723259940625 df.mm.trans2:probe4 0.325502283574042 0.0535374537451079 6.07989847861947 2.05738565668790e-09 *** df.mm.trans2:probe5 0.0642865821769792 0.0535374537451079 1.20077772998036 0.230277535180424 df.mm.trans2:probe6 0.194654142683823 0.0535374537451079 3.63584984094635 0.000299126405395314 *** df.mm.trans3:probe2 -0.0415874939713632 0.0535374537451079 -0.776792526767549 0.437565521325658 df.mm.trans3:probe3 -0.693954585369674 0.0535374537451079 -12.9620394102715 2.55673824416360e-34 *** df.mm.trans3:probe4 -0.502951762387799 0.0535374537451079 -9.39439079008791 9.74017477706576e-20 *** df.mm.trans3:probe5 -0.312987777386963 0.0535374537451079 -5.84614611813814 7.98671572163147e-09 *** df.mm.trans3:probe6 -0.363507186925294 0.0535374537451079 -6.78977354163973 2.54865009239421e-11 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.43161237081194 0.208403999766759 21.2645264763234 1.80271300171255e-76 *** df.mm.trans1 0.0848671249867494 0.180995749702620 0.468890154195268 0.639306346502234 df.mm.trans2 -0.165072970822923 0.164476431179597 -1.00362690045649 0.31593426123595 df.mm.exp2 0.204664696863027 0.217794660768858 0.93971402301838 0.34771550092968 df.mm.exp3 0.12751140232816 0.217794660768858 0.585466153660606 0.558438777472895 df.mm.exp4 0.0625480219604327 0.217794660768858 0.287188040972289 0.774060437144096 df.mm.exp5 0.172925442827224 0.217794660768858 0.793983847982143 0.427496391551321 df.mm.exp6 0.353546138124296 0.217794660768858 1.62330029981547 0.105013069666246 df.mm.exp7 0.0537482297614864 0.217794660768858 0.246783964178665 0.805153823438363 df.mm.exp8 -0.183314019348086 0.217794660768858 -0.841682797461384 0.400276996840734 df.mm.trans1:exp2 -0.279254133946715 0.200796755751951 -1.39073030787252 0.164786090451842 df.mm.trans2:exp2 0.0722336185460427 0.165150978498971 0.437379295009703 0.661982477336795 df.mm.trans1:exp3 -0.120155654216938 0.200796755751951 -0.598394400183281 0.549786545234062 df.mm.trans2:exp3 -0.126236785839111 0.165150978498971 -0.764372012727112 0.444924690070939 df.mm.trans1:exp4 -0.122072035578066 0.200796755751951 -0.60793828625829 0.54344206700717 df.mm.trans2:exp4 -0.00918262835420107 0.165150978498971 -0.0556014165805155 0.955676527662536 df.mm.trans1:exp5 -0.195280842009978 0.200796755751951 -0.97252986622559 0.331151018069118 df.mm.trans2:exp5 -0.00765045093846697 0.165150978498971 -0.0463239818982642 0.963066341442192 df.mm.trans1:exp6 -0.371481417897955 0.200796755751951 -1.85003695157732 0.0647646885510533 . df.mm.trans2:exp6 -0.0919285065937766 0.165150978498971 -0.556633133084036 0.577970883325352 df.mm.trans1:exp7 -0.0217630680927883 0.200796755751951 -0.108383564322487 0.913725092914064 df.mm.trans2:exp7 -0.0515673026112045 0.165150978498971 -0.312243397404549 0.75495631179752 df.mm.trans1:exp8 -0.00147760204041207 0.200796755751951 -0.00735869479005621 0.994130935860396 df.mm.trans2:exp8 0.108350032884752 0.165150978498971 0.656066551161408 0.51201490500283 df.mm.trans1:probe2 -0.328323804060505 0.122962398399636 -2.67011548516995 0.00777326499166129 ** df.mm.trans1:probe3 -0.280693822474343 0.122962398399636 -2.28276144681295 0.0227684926000447 * df.mm.trans1:probe4 -0.194101576075275 0.122962398399636 -1.57854416147961 0.114930165365063 df.mm.trans1:probe5 -0.248004762301458 0.122962398399636 -2.01691545976052 0.0441175443928863 * df.mm.trans1:probe6 -0.250982533145501 0.122962398399636 -2.04113238202943 0.041643547382842 * df.mm.trans1:probe7 -0.255045858789681 0.122962398399636 -2.07417765194173 0.0384583478492252 * df.mm.trans1:probe8 -0.211144026429094 0.122962398399636 -1.71714303866180 0.0864323388512272 . df.mm.trans1:probe9 -0.263202190017834 0.122962398399636 -2.14050956587891 0.0326873695195024 * df.mm.trans1:probe10 -0.251644640085132 0.122962398399636 -2.04651701138156 0.0411097477274056 * df.mm.trans1:probe11 -0.120354563632408 0.122962398399636 -0.978791607831587 0.328049359178256 df.mm.trans1:probe12 -0.236941232306931 0.122962398399636 -1.92694055573686 0.0544253094656858 . df.mm.trans1:probe13 -0.230922144917565 0.122962398399636 -1.87798992149659 0.0608327778964611 . df.mm.trans1:probe14 -0.188007077405716 0.122962398399636 -1.52898023991595 0.126758830215473 df.mm.trans1:probe15 -0.150599912522417 0.122962398399636 -1.22476394802383 0.221110584609671 df.mm.trans1:probe16 -0.0384711543489727 0.122962398399636 -0.312869257998196 0.75448097117582 df.mm.trans1:probe17 -0.188725440426075 0.122962398399636 -1.53482237563962 0.12531705921382 df.mm.trans2:probe2 -0.0185820640725941 0.122962398399636 -0.151119889612117 0.879928320126734 df.mm.trans2:probe3 -0.0644849799139132 0.122962398399636 -0.524428449291732 0.600160470933783 df.mm.trans2:probe4 -0.182198326998513 0.122962398399636 -1.48174018537241 0.138897043909744 df.mm.trans2:probe5 -0.0315212338764203 0.122962398399636 -0.256348560915136 0.797763316761814 df.mm.trans2:probe6 -0.156402924523266 0.122962398399636 -1.27195733459058 0.203845970543819 df.mm.trans3:probe2 0.0172271468264061 0.122962398399636 0.140100933705089 0.888623912847616 df.mm.trans3:probe3 0.0893114505836985 0.122962398399636 0.726331396801731 0.467898718354644 df.mm.trans3:probe4 0.123676578914624 0.122962398399636 1.00580812121659 0.314884470386036 df.mm.trans3:probe5 -0.0194311366052990 0.122962398399636 -0.158025029262576 0.87448645897551 df.mm.trans3:probe6 0.145686356633351 0.122962398399636 1.18480412328865 0.236530596086234