fitVsDatCorrelation=0.904416919867033 cont.fitVsDatCorrelation=0.259015255053908 fstatistic=7303.48032972732,59,853 cont.fstatistic=1413.42173480024,59,853 residuals=-0.86823690283037,-0.130749773581107,0.00774657512549014,0.130118641587737,0.89672552260389 cont.residuals=-0.93704338422349,-0.333855704782133,-0.098463262686524,0.247661888925317,1.68940391303309 predictedValues: Include Exclude Both Lung 145.347788563621 88.5734822542694 161.981444803311 cerebhem 91.513036297174 102.470625334997 94.394139631479 cortex 102.226916277613 95.6071978687776 130.396949358935 heart 91.2654382987301 83.7562238099647 113.610644167167 kidney 79.4862436918834 85.7187923539617 80.4467714031934 liver 69.8614143825542 92.3039281693977 68.4685697980705 stomach 95.0897529798 76.6798131545215 98.4020950270869 testicle 86.4383725209072 75.0034375165649 82.937449193817 diffExp=56.7743063093517,-10.9575890378232,6.61971840883578,7.50921448876545,-6.23254866207832,-22.4425137868436,18.4099398252785,11.4349350043423 diffExpScore=2.25999710475803 diffExp1.5=1,0,0,0,0,0,0,0 diffExp1.5Score=0.5 diffExp1.4=1,0,0,0,0,0,0,0 diffExp1.4Score=0.5 diffExp1.3=1,0,0,0,0,-1,0,0 diffExp1.3Score=2 diffExp1.2=1,0,0,0,0,-1,1,0 diffExp1.2Score=1.5 cont.predictedValues: Include Exclude Both Lung 102.042706574635 104.903120763748 93.8474891193947 cerebhem 103.359782548684 80.2360903655207 111.612724943006 cortex 112.189933357213 95.6005945567334 98.6923526532208 heart 100.111064220532 127.786367369970 102.535754323262 kidney 100.338902779454 91.4171219340594 96.4066079085263 liver 107.621158327212 95.458815998893 108.711912692597 stomach 97.0052495629587 91.1796062821664 100.388240199329 testicle 125.665846996744 117.713250896520 105.027746509836 cont.diffExp=-2.86041418911323,23.1236921831637,16.5893388004795,-27.6753031494382,8.9217808453944,12.1623423283185,5.82564328079224,7.95259610022424 cont.diffExpScore=2.33374481669434 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,0,0,0,0,0,0,0 cont.diffExp1.3Score=0 cont.diffExp1.2=0,1,0,-1,0,0,0,0 cont.diffExp1.2Score=2 tran.correlation=0.0595106067648259 cont.tran.correlation=0.309057003365469 tran.covariance=0.00120619022034651 cont.tran.covariance=0.0038891652681128 tran.mean=91.3339039671711 cont.tran.mean=103.289350783440 weightedLogRatios: wLogRatio Lung 2.34348783902406 cerebhem -0.517185504130909 cortex 0.307535431804750 heart 0.383873959994207 kidney -0.333153795418837 liver -1.22176642847495 stomach 0.956967069839356 testicle 0.622715871996227 cont.weightedLogRatios: wLogRatio Lung -0.128255011208778 cerebhem 1.14252759624716 cortex 0.742495811172137 heart -1.15408671312916 kidney 0.42481596404599 liver 0.553880132239263 stomach 0.281414866970886 testicle 0.313860360047734 varWeightedLogRatios=1.15722814367929 cont.varWeightedLogRatios=0.468251713642775 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 3.97640400871678 0.0995679394008496 39.9365903587521 1.80298302941974e-197 *** df.mm.trans1 0.668702291600291 0.0859844369528062 7.77701541463041 2.13897327512340e-14 *** df.mm.trans2 0.488594550979884 0.0759668614050813 6.43168010291396 2.100159659987e-10 *** df.mm.exp2 0.22309848232115 0.0977176734224777 2.2830924489636 0.0226701335772371 * df.mm.exp3 -0.05862027159917 0.0977176734224777 -0.599894262174336 0.54873602716689 df.mm.exp4 -0.166574690836003 0.0977176734224777 -1.70465264881846 0.088623366767891 . df.mm.exp5 0.063580175329239 0.0977176734224777 0.650651751135674 0.515446530170702 df.mm.exp6 0.169745242178334 0.0977176734224777 1.73709868678974 0.0827307231337824 . df.mm.exp7 -0.0700825368416817 0.0977176734224777 -0.717194079505794 0.473450691172751 df.mm.exp8 -0.0166011872177517 0.0977176734224777 -0.169889300843025 0.865137478506337 df.mm.trans1:exp2 -0.685746459323429 0.0903224775817976 -7.59220160565685 8.25090271737583e-14 *** df.mm.trans2:exp2 -0.0773548223695381 0.066707570606945 -1.15961084575136 0.24653176941918 df.mm.trans1:exp3 -0.293314128969743 0.0903224775817976 -3.24741013336478 0.00121008575821838 ** df.mm.trans2:exp3 0.135035864879906 0.0667075706069449 2.02429594799016 0.043250907906769 * df.mm.trans1:exp4 -0.298782556505047 0.0903224775817976 -3.30795350730348 0.000979141793092298 *** df.mm.trans2:exp4 0.110652657472085 0.0667075706069449 1.65877210735306 0.0975293421622054 . df.mm.trans1:exp5 -0.667125616292084 0.0903224775817976 -7.38604203685537 3.60149551977404e-13 *** df.mm.trans2:exp5 -0.0963406085444324 0.0667075706069449 -1.44422301198902 0.149043446670756 df.mm.trans1:exp6 -0.902361169376192 0.0903224775817976 -9.99043863205589 2.66570209630166e-22 *** df.mm.trans2:exp6 -0.128491058316855 0.0667075706069449 -1.92618404699448 0.0544134203416341 . df.mm.trans1:exp7 -0.354225661690514 0.0903224775817976 -3.92178858656442 9.49533886778664e-05 *** df.mm.trans2:exp7 -0.0741114971317747 0.0667075706069449 -1.11099079845757 0.266885366948764 df.mm.trans1:exp8 -0.503096521496359 0.0903224775817976 -5.57000355798196 3.41483016145608e-08 *** df.mm.trans2:exp8 -0.149697382198830 0.0667075706069449 -2.24408385490275 0.0250827472037841 * df.mm.trans1:probe2 0.243394086293192 0.0618395730266315 3.93589532366877 8.96381782065809e-05 *** df.mm.trans1:probe3 -0.0359208682320891 0.0618395730266315 -0.58087186689694 0.561480249036758 df.mm.trans1:probe4 0.8623105207972 0.0618395730266315 13.9443155667624 5.80479739618312e-40 *** df.mm.trans1:probe5 -0.0286668140064839 0.0618395730266315 -0.463567463412764 0.643075931128689 df.mm.trans1:probe6 0.0358737726372933 0.0618395730266315 0.58011028992461 0.561993444933992 df.mm.trans1:probe7 -0.0904211472850811 0.0618395730266315 -1.46218906210981 0.144057720397942 df.mm.trans1:probe8 0.120209776201815 0.0618395730266315 1.94389725411018 0.052236355034758 . df.mm.trans1:probe9 0.756938108669886 0.0618395730266315 12.2403514711188 7.47005524447941e-32 *** df.mm.trans1:probe10 0.0500476262304258 0.0618395730266315 0.809313903394394 0.418560297626474 df.mm.trans1:probe11 0.327146904085188 0.0618395730266315 5.2902516636766 1.553698236548e-07 *** df.mm.trans1:probe12 0.307216158415664 0.0618395730266315 4.96795406855995 8.1755708803745e-07 *** df.mm.trans1:probe13 0.354480655399987 0.0618395730266315 5.73226233705282 1.37460351620081e-08 *** df.mm.trans1:probe14 0.338827032375115 0.0618395730266315 5.47912955720437 5.62809973355323e-08 *** df.mm.trans1:probe15 0.22231959154669 0.0618395730266315 3.59510230529805 0.000342876503369319 *** df.mm.trans1:probe16 0.373221568974231 0.0618395730266315 6.0353193061909 2.363920176412e-09 *** df.mm.trans1:probe17 1.10742760238196 0.0618395730266315 17.9080732317644 3.98591334990155e-61 *** df.mm.trans1:probe18 1.19231042917260 0.0618395730266315 19.2807028059384 4.92363812483107e-69 *** df.mm.trans1:probe19 1.00046276571916 0.0618395730266315 16.1783582381512 1.51251151166242e-51 *** df.mm.trans1:probe20 1.21136625607867 0.0618395730266315 19.5888521991733 7.67169239694502e-71 *** df.mm.trans1:probe21 1.19180710147521 0.0618395730266315 19.2725635567043 5.49384326387567e-69 *** df.mm.trans1:probe22 1.14838845743733 0.0618395730266315 18.5704460951368 6.52861039491763e-65 *** df.mm.trans2:probe2 0.0220119690562374 0.0618395730266315 0.355952798166279 0.721963928052713 df.mm.trans2:probe3 0.0730539904076882 0.0618395730266315 1.18134694067547 0.237794184591403 df.mm.trans2:probe4 0.0576405472203814 0.0618395730266315 0.932098078936577 0.35154958136179 df.mm.trans2:probe5 -0.0204347062757388 0.0618395730266315 -0.330447079040123 0.741143318206635 df.mm.trans2:probe6 0.169071491753052 0.0618395730266315 2.73403394425509 0.00638600468428298 ** df.mm.trans3:probe2 0.127438781686954 0.0618395730266315 2.06079659754559 0.0396251321809523 * df.mm.trans3:probe3 -0.136858595464597 0.0618395730266315 -2.21312322783435 0.0271531665330015 * df.mm.trans3:probe4 -0.602864985531255 0.0618395730266315 -9.74885426960546 2.31479302846160e-21 *** df.mm.trans3:probe5 0.34845592772541 0.0618395730266315 5.63483721945081 2.3804085694368e-08 *** df.mm.trans3:probe6 0.120803640021466 0.0618395730266315 1.95350055165227 0.0510868723536288 . df.mm.trans3:probe7 0.123144180029563 0.0618395730266315 1.99134913134879 0.0467610679029456 * df.mm.trans3:probe8 -0.289791986394694 0.0618395730266315 -4.68618996237075 3.23854242499205e-06 *** df.mm.trans3:probe9 0.223102967638507 0.0618395730266315 3.60777018208755 0.000326807176670562 *** df.mm.trans3:probe10 -0.375620538468839 0.0618395730266315 -6.07411274180493 1.87626429620895e-09 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.72724852369411 0.225407375626189 20.9720223686633 4.44065288846525e-79 *** df.mm.trans1 -0.0816822761123785 0.194656295940801 -0.419623088570533 0.67486648083789 df.mm.trans2 -0.0710782163783885 0.171977957632933 -0.413298409614194 0.679491871546052 df.mm.exp2 -0.428603385750026 0.221218641773656 -1.93746504505058 0.0530183233680876 . df.mm.exp3 -0.0483928288622668 0.221218641773656 -0.218755654922521 0.826892720369469 df.mm.exp4 0.0896708421918794 0.221218641773656 0.405349393129481 0.685322347163967 df.mm.exp5 -0.181346145387844 0.221218641773656 -0.819759781245703 0.412582055666775 df.mm.exp6 -0.188146878928495 0.221218641773656 -0.850501917107878 0.395284762858077 df.mm.exp7 -0.258206391848362 0.221218641773656 -1.16719996912625 0.243455800215235 df.mm.exp8 0.210895724418628 0.221218641773656 0.953336132650201 0.340689856721205 df.mm.trans1:exp2 0.441427904392 0.204476990829385 2.15881455708788 0.0311428207107357 * df.mm.trans2:exp2 0.160539539105957 0.151016266032938 1.06306124050863 0.288055036421038 df.mm.trans1:exp3 0.143194679836331 0.204476990829385 0.700297276752337 0.483932627483432 df.mm.trans2:exp3 -0.0444653967394913 0.151016266032938 -0.294441108282952 0.768492496489866 df.mm.trans1:exp4 -0.108782047870687 0.204476990829385 -0.532001412136657 0.594863546133228 df.mm.trans2:exp4 0.107651757612793 0.151016266032938 0.71284875755909 0.476134304661496 df.mm.trans1:exp5 0.164508211792335 0.204476990829385 0.80453165476012 0.421314165934229 df.mm.trans2:exp5 0.0437416711457685 0.151016266032938 0.289648739800176 0.772155364547099 df.mm.trans1:exp6 0.241372728488595 0.204476990829385 1.18043955708443 0.238154499720514 df.mm.trans2:exp6 0.0938045224644878 0.151016266032938 0.621155090962376 0.534663531984631 df.mm.trans1:exp7 0.207580070527658 0.204476990829385 1.01517569133665 0.310309942500675 df.mm.trans2:exp7 0.118000383743423 0.151016266032938 0.781375323620346 0.434798590706053 df.mm.trans1:exp8 -0.00266076579777952 0.204476990829385 -0.0130125437927618 0.98962082795928 df.mm.trans2:exp8 -0.0956813993831977 0.151016266032938 -0.63358340062738 0.526522579218115 df.mm.trans1:probe2 -0.149409618782536 0.139995825460039 -1.06724338594785 0.286163900533989 df.mm.trans1:probe3 0.0133197786479361 0.139995825460039 0.0951441130774156 0.924222705657852 df.mm.trans1:probe4 0.224197555168793 0.139995825460039 1.60145886087717 0.109645568685088 df.mm.trans1:probe5 -0.187167908093103 0.139995825460039 -1.33695349470638 0.181594255644585 df.mm.trans1:probe6 0.0981526603468083 0.139995825460039 0.701111336886439 0.48342475041131 df.mm.trans1:probe7 -0.105361237804173 0.139995825460039 -0.752602711244757 0.451896325452532 df.mm.trans1:probe8 -0.062718038744313 0.139995825460039 -0.447999349539288 0.654267425264757 df.mm.trans1:probe9 -0.122710171797550 0.139995825460039 -0.876527363543257 0.380990183305144 df.mm.trans1:probe10 0.0298898818979705 0.139995825460039 0.213505522752194 0.830983701241004 df.mm.trans1:probe11 -0.0444200586174651 0.139995825460039 -0.317295594147161 0.751096967064612 df.mm.trans1:probe12 0.0409971450179355 0.139995825460039 0.292845482236454 0.769711483358358 df.mm.trans1:probe13 -0.00830128366831398 0.139995825460039 -0.0592966514611077 0.952729716760293 df.mm.trans1:probe14 -0.150950468006220 0.139995825460039 -1.07824978002154 0.281227118091171 df.mm.trans1:probe15 -0.0384890668458831 0.139995825460039 -0.274930103947062 0.783436514428166 df.mm.trans1:probe16 0.0169204337626443 0.139995825460039 0.120863845097111 0.903827343176495 df.mm.trans1:probe17 0.181327059650030 0.139995825460039 1.29523190462410 0.195590672836766 df.mm.trans1:probe18 -0.0326403699599493 0.139995825460039 -0.233152451886977 0.815698962038987 df.mm.trans1:probe19 0.0237481367108852 0.139995825460039 0.169634606123766 0.865337726186428 df.mm.trans1:probe20 -0.176760775213003 0.139995825460039 -1.26261461462976 0.207072772245488 df.mm.trans1:probe21 -0.122209638189981 0.139995825460039 -0.872952016879 0.382934899391199 df.mm.trans1:probe22 -0.0730085760011304 0.139995825460039 -0.521505378901247 0.602150131380947 df.mm.trans2:probe2 0.0492822827787921 0.139995825460039 0.352026802348186 0.724905110809533 df.mm.trans2:probe3 0.0416234840821865 0.139995825460039 0.297319466101279 0.766295011458245 df.mm.trans2:probe4 -0.090252464199445 0.139995825460039 -0.644679681718133 0.519308118177456 df.mm.trans2:probe5 0.0118480406572229 0.139995825460039 0.0846313853880229 0.93257430496766 df.mm.trans2:probe6 -0.0626300227307253 0.139995825460039 -0.447370644981145 0.654721045504834 df.mm.trans3:probe2 -0.154034714811830 0.139995825460039 -1.10028077127056 0.271520214602368 df.mm.trans3:probe3 -0.0202226694759592 0.139995825460039 -0.144451946402728 0.885177721060264 df.mm.trans3:probe4 0.0494548407161335 0.139995825460039 0.353259395797129 0.723981265819238 df.mm.trans3:probe5 0.0252160469574956 0.139995825460039 0.180119991968571 0.857101148770296 df.mm.trans3:probe6 -0.0274556105060115 0.139995825460039 -0.196117351469517 0.844565026581282 df.mm.trans3:probe7 -0.0711361595871238 0.139995825460039 -0.508130577132311 0.611493146663151 df.mm.trans3:probe8 0.0418993758962609 0.139995825460039 0.299290180679144 0.764791551782859 df.mm.trans3:probe9 -0.126642013671882 0.139995825460039 -0.904612785815044 0.365925976415069 df.mm.trans3:probe10 -0.0452493226908278 0.139995825460039 -0.323219085584406 0.746608546463315