fitVsDatCorrelation=0.854251657218727 cont.fitVsDatCorrelation=0.261899182156202 fstatistic=11204.6947161062,62,922 cont.fstatistic=3240.55633260441,62,922 residuals=-0.642397709389171,-0.0885239784598013,-0.00435313178463366,0.0865394147943733,0.872910251912048 cont.residuals=-0.739309740955388,-0.192386087417608,-0.0243689604276331,0.183819557628825,1.32621500918584 predictedValues: Include Exclude Both Lung 69.3911152686823 101.303950559015 96.4356664240204 cerebhem 61.2503090381308 81.0502636713246 88.1963612381414 cortex 64.1404957674141 82.8903622103936 89.3404948145594 heart 62.1387304618703 93.541837698635 90.5737657861214 kidney 71.5690879128523 105.111067455247 100.442880900691 liver 65.8332686739676 103.72752869065 109.707933347072 stomach 61.9972241265861 92.7358673296037 94.6761676866376 testicle 64.0260679170718 101.531377284311 103.289209717118 diffExp=-31.9128352903322,-19.7999546331939,-18.7498664429795,-31.4031072367648,-33.5419795423951,-37.8942600166823,-30.7386432030176,-37.5053093672391 diffExpScore=0.995877069988739 diffExp1.5=0,0,0,-1,0,-1,0,-1 diffExp1.5Score=0.75 diffExp1.4=-1,0,0,-1,-1,-1,-1,-1 diffExp1.4Score=0.857142857142857 diffExp1.3=-1,-1,0,-1,-1,-1,-1,-1 diffExp1.3Score=0.875 diffExp1.2=-1,-1,-1,-1,-1,-1,-1,-1 diffExp1.2Score=0.888888888888889 cont.predictedValues: Include Exclude Both Lung 81.1277972017387 78.5382143136981 87.6549606788607 cerebhem 74.8033214486799 76.584687876267 84.3262280268011 cortex 81.0658565047767 84.675260791809 88.5554797526712 heart 79.4577768576337 81.1648085268536 78.3277440751647 kidney 79.2729101653143 73.4992014716168 86.1888481092464 liver 73.631271707635 71.7595526555995 77.8536161528591 stomach 81.2189765593699 75.8826920787764 76.9563281305769 testicle 79.8867268066177 67.1271678509645 85.4915482559356 cont.diffExp=2.58958288804055,-1.78136642758703,-3.60940428703225,-1.70703166921996,5.77370869369747,1.87171905203556,5.33628448059346,12.7595589556532 cont.diffExpScore=1.59351298031121 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,0,0,0,0,0,0,0 cont.diffExp1.3Score=0 cont.diffExp1.2=0,0,0,0,0,0,0,0 cont.diffExp1.2Score=0 tran.correlation=0.697214366786504 cont.tran.correlation=0.329671871897240 tran.covariance=0.00387583227845905 cont.tran.covariance=0.000873555125616046 tran.mean=80.1399096291097 cont.tran.mean=77.4810139260844 weightedLogRatios: wLogRatio Lung -1.67576364807003 cerebhem -1.19183345780399 cortex -1.09995974117216 heart -1.77273108572631 kidney -1.71531203067410 liver -2.00699377410200 stomach -1.74290727945518 testicle -2.02405175513929 cont.weightedLogRatios: wLogRatio Lung 0.142082386445827 cerebhem -0.101826673280123 cortex -0.192413494756009 heart -0.0932256586942769 kidney 0.327827473318844 liver 0.110364555332847 stomach 0.296522253408097 testicle 0.74717587549477 varWeightedLogRatios=0.115476439298418 cont.varWeightedLogRatios=0.0929999810892778 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.23046635031579 0.0757825590475806 55.8237463010409 5.74739305049375e-298 *** df.mm.trans1 -0.134514107423172 0.0648963064248397 -2.07275444218017 0.0384725017356144 * df.mm.trans2 0.414355573737442 0.0570470380033298 7.26340206678665 8.02852552977286e-13 *** df.mm.exp2 -0.258535439569415 0.072461986129793 -3.56787680517519 0.000378424898533629 *** df.mm.exp3 -0.202868262919167 0.072461986129793 -2.79965087564384 0.00522263438189664 ** df.mm.exp4 -0.127394468073487 0.072461986129793 -1.75808689324772 0.0790645027821032 . df.mm.exp5 0.0270834778731593 0.072461986129793 0.373761185963737 0.708667926543383 df.mm.exp6 -0.157936954526188 0.072461986129793 -2.17958357149214 0.0295407637433304 * df.mm.exp7 -0.182625508893976 0.072461986129793 -2.52029400031706 0.0118935293182389 * df.mm.exp8 -0.146882846244928 0.072461986129793 -2.02703312578037 0.0429463411583298 * df.mm.trans1:exp2 0.133745497249887 0.0661484406081902 2.02189947367146 0.0434751383990833 * df.mm.trans2:exp2 0.0354795318367527 0.0467740109189669 0.758530883704175 0.448327083458411 df.mm.trans1:exp3 0.124185349359821 0.0661484406081902 1.87737380077324 0.0607824045912493 . df.mm.trans2:exp3 0.00226165118251463 0.0467740109189669 0.0483527313155334 0.961445601864395 df.mm.trans1:exp4 0.0170051042890116 0.0661484406081902 0.25707490808039 0.797178304544303 df.mm.trans2:exp4 0.0476778572018922 0.0467740109189669 1.01932368563584 0.308316711635552 df.mm.trans1:exp5 0.00382093255702872 0.0661484406081902 0.0577630027540759 0.953949924370433 df.mm.trans2:exp5 0.0098086894093359 0.0467740109189669 0.209703833744958 0.833945160348654 df.mm.trans1:exp6 0.105303430779053 0.0661484406081902 1.59192612570847 0.111744072485191 df.mm.trans2:exp6 0.181579090141848 0.0467740109189669 3.88205087770690 0.00011096195013655 *** df.mm.trans1:exp7 0.0699562835327894 0.0661484406081902 1.05756512004801 0.290530754380776 df.mm.trans2:exp7 0.0942554158641914 0.0467740109189669 2.01512365547361 0.0441815143891794 * df.mm.trans1:exp8 0.0664143206280162 0.0661484406081902 1.00401944501460 0.315632663291733 df.mm.trans2:exp8 0.149125323657711 0.0467740109189669 3.18820902308468 0.00147981664827830 ** df.mm.trans1:probe2 0.245758534867363 0.047929098701311 5.12754342406694 3.57750003880326e-07 *** df.mm.trans1:probe3 0.158626624696452 0.047929098701311 3.30961000716904 0.000970474277124392 *** df.mm.trans1:probe4 -0.0675500986806126 0.047929098701311 -1.40937552574434 0.159061347134815 df.mm.trans1:probe5 -0.162316193234872 0.047929098701311 -3.38658972592849 0.000737582929527052 *** df.mm.trans1:probe6 0.234515045206905 0.047929098701311 4.89295754690439 1.17197187161662e-06 *** df.mm.trans1:probe7 0.230665763901295 0.047929098701311 4.81264555669572 1.73964832910478e-06 *** df.mm.trans1:probe8 0.298893976582165 0.047929098701311 6.2361693560073 6.82024623386205e-10 *** df.mm.trans1:probe9 0.274347072463724 0.047929098701311 5.72401901762071 1.40655641589470e-08 *** df.mm.trans1:probe10 0.538333093791089 0.047929098701311 11.2318634895666 1.58740788992089e-27 *** df.mm.trans1:probe11 0.330368129989866 0.047929098701311 6.89285087643072 1.01322944497305e-11 *** df.mm.trans1:probe12 0.364868855338206 0.047929098701311 7.61267925382926 6.63285091281906e-14 *** df.mm.trans1:probe13 0.307532895051077 0.047929098701311 6.41641306396326 2.22783611310091e-10 *** df.mm.trans1:probe14 0.27233237229215 0.047929098701311 5.68198400702871 1.7850135185781e-08 *** df.mm.trans1:probe15 0.168504926547726 0.047929098701311 3.51571239838727 0.000459936435484088 *** df.mm.trans1:probe16 0.287257272059919 0.047929098701311 5.99337938420406 2.94561035705176e-09 *** df.mm.trans1:probe17 0.264011212965944 0.047929098701311 5.50837007412206 4.69834582287064e-08 *** df.mm.trans1:probe18 0.240376174917455 0.047929098701311 5.01524504801254 6.35221463223574e-07 *** df.mm.trans1:probe19 0.290575414679921 0.047929098701311 6.06260961614896 1.95097505731977e-09 *** df.mm.trans1:probe20 0.509262151282742 0.047929098701311 10.6253229266089 5.88966181217329e-25 *** df.mm.trans1:probe21 0.246867577864577 0.047929098701311 5.15068266572316 3.1739369829851e-07 *** df.mm.trans2:probe2 0.0670464206360314 0.047929098701311 1.39886671046867 0.162189250119868 df.mm.trans2:probe3 -0.215493012332699 0.047929098701311 -4.49607896187717 7.80321083833358e-06 *** df.mm.trans2:probe4 -0.190384362009942 0.047929098701311 -3.97220826530449 7.67594339902622e-05 *** df.mm.trans2:probe5 -0.0879285968487649 0.047929098701311 -1.83455560883225 0.0668936398281387 . df.mm.trans2:probe6 -0.107170748460348 0.047929098701311 -2.23602678465173 0.0255885936004052 * df.mm.trans3:probe2 0.446856566652382 0.047929098701311 9.32328332391861 8.11431122946514e-20 *** df.mm.trans3:probe3 0.219592708005979 0.047929098701311 4.58161563551314 5.24798349302676e-06 *** df.mm.trans3:probe4 0.144796907350005 0.047929098701311 3.02106468248785 0.00258839383277462 ** df.mm.trans3:probe5 0.0880845603090718 0.047929098701311 1.83780965417283 0.0664120661870339 . df.mm.trans3:probe6 -0.26705135675812 0.047929098701311 -5.57180009627044 3.3091450297715e-08 *** df.mm.trans3:probe7 0.260011836235977 0.047929098701311 5.42492647016674 7.41087886751284e-08 *** df.mm.trans3:probe8 0.401058871480377 0.047929098701311 8.36775325110394 2.15925817460662e-16 *** df.mm.trans3:probe9 0.383091938923593 0.047929098701311 7.99288843946306 3.925738595596e-15 *** df.mm.trans3:probe10 -0.29514482997749 0.047929098701311 -6.15794659141831 1.09879153522972e-09 *** df.mm.trans3:probe11 -0.568441054640632 0.047929098701311 -11.8600405608104 2.6828770677217e-30 *** df.mm.trans3:probe12 0.282009594717132 0.047929098701311 5.8838910465349 5.60359229802392e-09 *** df.mm.trans3:probe13 -0.348417304726222 0.047929098701311 -7.26943160140608 7.69680164113026e-13 *** df.mm.trans3:probe14 0.0735077653823095 0.047929098701311 1.53367718930836 0.125452138317834 cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.12849628417976 0.140686779660703 29.3453037601440 3.31670053320231e-134 *** df.mm.trans1 0.218846520326936 0.120476960365676 1.81650101116998 0.0696181612604318 . df.mm.trans2 0.212442143166055 0.105905160326285 2.00596592754818 0.0451516022547717 * df.mm.exp2 -0.0676362571258733 0.134522291204477 -0.502788471117138 0.615233073790042 df.mm.exp3 0.0642533395145922 0.134522291204477 0.477640835130631 0.633019071952056 df.mm.exp4 0.124602900625169 0.134522291204477 0.926262105034842 0.354552168514275 df.mm.exp5 -0.0725725581895886 0.134522291204477 -0.539483512656477 0.589683524966689 df.mm.exp6 -0.0686423020392132 0.134522291204477 -0.510267119483383 0.609986467926812 df.mm.exp7 0.0968966888212637 0.134522291204477 0.720302099776004 0.471521578054003 df.mm.exp8 -0.147421717047194 0.134522291204477 -1.09589061951903 0.273412811313494 df.mm.trans1:exp2 -0.0135271090599500 0.122801488966618 -0.110154275601880 0.912310995748575 df.mm.trans2:exp2 0.0424481038332217 0.0868337655881005 0.488843292073454 0.625068901816493 df.mm.trans1:exp3 -0.0650171264884681 0.122801488966618 -0.529449007789655 0.596621460699143 df.mm.trans2:exp3 0.0109848262191524 0.0868337655881005 0.126504086800282 0.899360495500505 df.mm.trans1:exp4 -0.145402783336607 0.122801488966618 -1.18404739682052 0.236699459658287 df.mm.trans2:exp4 -0.0917064528060767 0.0868337655881005 -1.05611512048308 0.291192269721266 df.mm.trans1:exp5 0.0494433618542683 0.122801488966618 0.402628357932279 0.687314977030066 df.mm.trans2:exp5 0.00626178713719607 0.0868337655881005 0.0721123527787463 0.942528135229533 df.mm.trans1:exp6 -0.0283135297075472 0.122801488966618 -0.230563407217675 0.817705146518314 df.mm.trans2:exp6 -0.0216220270064284 0.0868337655881005 -0.24900482963037 0.803412502664975 df.mm.trans1:exp7 -0.0957734220620197 0.122801488966618 -0.779904403993462 0.43564730137725 df.mm.trans2:exp7 -0.131293379156978 0.0868337655881005 -1.51200835605557 0.130874399804240 df.mm.trans1:exp8 0.132005778874522 0.122801488966618 1.07495259206838 0.282677176181264 df.mm.trans2:exp8 -0.00957474779438072 0.0868337655881005 -0.110265260633737 0.912223003106497 df.mm.trans1:probe2 0.170673826249108 0.0889781320804142 1.91815474497555 0.0553999958177366 . df.mm.trans1:probe3 -0.0449958001719382 0.0889781320804142 -0.505695041240843 0.61319162294115 df.mm.trans1:probe4 0.00361406696042608 0.0889781320804143 0.0406174739334813 0.967609646945288 df.mm.trans1:probe5 0.0863061909383554 0.0889781320804142 0.969970811034289 0.332315420824185 df.mm.trans1:probe6 0.0827169904075894 0.0889781320804143 0.929632803853802 0.352804559708487 df.mm.trans1:probe7 0.107760025741791 0.0889781320804142 1.21108437795033 0.226173396895233 df.mm.trans1:probe8 0.0831017414177289 0.0889781320804142 0.93395691137487 0.35057064396421 df.mm.trans1:probe9 0.0981860301270455 0.0889781320804142 1.10348495558785 0.270104542882751 df.mm.trans1:probe10 0.137546128197797 0.0889781320804143 1.54584193870792 0.122485895764146 df.mm.trans1:probe11 0.0371710823547714 0.0889781320804142 0.417755256102454 0.676223335170798 df.mm.trans1:probe12 0.174771794132653 0.0889781320804143 1.96421064419179 0.0498057296219262 * df.mm.trans1:probe13 0.106978531096208 0.0889781320804142 1.20230138119247 0.229555467276768 df.mm.trans1:probe14 0.119445747399831 0.0889781320804142 1.34241689061174 0.179791291361936 df.mm.trans1:probe15 -0.0103626392169255 0.0889781320804142 -0.116462764216721 0.90731115702438 df.mm.trans1:probe16 0.128911047290074 0.0889781320804142 1.44879471254320 0.147734921597308 df.mm.trans1:probe17 0.141518061024693 0.0889781320804142 1.59048136565505 0.112069140805648 df.mm.trans1:probe18 0.175570078128032 0.0889781320804142 1.97318233169201 0.0487731065388126 * df.mm.trans1:probe19 0.0567297605670305 0.0889781320804142 0.637569695391681 0.523912121020177 df.mm.trans1:probe20 0.00874819714429176 0.0889781320804142 0.0983185074776076 0.921700752511652 df.mm.trans1:probe21 0.0395088925854494 0.0889781320804142 0.444029242485593 0.657125633192494 df.mm.trans2:probe2 0.0206022000522591 0.0889781320804142 0.231542285397043 0.816944914423342 df.mm.trans2:probe3 0.0966175317112686 0.0889781320804142 1.08585704658253 0.277826059345254 df.mm.trans2:probe4 0.134348439523524 0.0889781320804142 1.50990402228388 0.131410527306565 df.mm.trans2:probe5 0.115550791618780 0.0889781320804142 1.29864258685887 0.194391317330706 df.mm.trans2:probe6 0.085818747786251 0.0889781320804142 0.964492575644228 0.335051926920329 df.mm.trans3:probe2 -0.158825025857855 0.0889781320804142 -1.78498943666649 0.0745917035068163 . df.mm.trans3:probe3 -0.0186312125209316 0.0889781320804142 -0.209390915332922 0.834189339368954 df.mm.trans3:probe4 -0.0645832128834669 0.0889781320804142 -0.725832419420759 0.468125707949948 df.mm.trans3:probe5 -0.020148267265451 0.0889781320804142 -0.226440663501926 0.820908895089679 df.mm.trans3:probe6 -0.136440375191413 0.0889781320804142 -1.53341469416445 0.125516757538310 df.mm.trans3:probe7 -0.13609281100107 0.0889781320804142 -1.52950851876814 0.126481425317821 df.mm.trans3:probe8 -0.0306842951165292 0.0889781320804142 -0.344852093419967 0.73028421671052 df.mm.trans3:probe9 -0.118514482722426 0.0889781320804142 -1.33195067092798 0.183205551548737 df.mm.trans3:probe10 -0.145601581241247 0.0889781320804142 -1.63637489163808 0.102102424376158 df.mm.trans3:probe11 -0.0866905868901375 0.0889781320804142 -0.97429092815514 0.330167649904973 df.mm.trans3:probe12 -0.00356366344822355 0.0889781320804142 -0.0400510031498849 0.96806113489532 df.mm.trans3:probe13 -0.0430376749759989 0.0889781320804142 -0.483688227317510 0.6287220016695 df.mm.trans3:probe14 -0.246461191280751 0.0889781320804142 -2.76990745386755 0.00571987651834724 **