fitVsDatCorrelation=0.849048279525695 cont.fitVsDatCorrelation=0.265076809857513 fstatistic=13045.6409524683,62,922 cont.fstatistic=3906.04623788763,62,922 residuals=-0.528530807498909,-0.0791705346424605,-0.00308922355968927,0.0754705808856444,0.9705349633274 cont.residuals=-0.54633195261858,-0.166356989292875,-0.048375280728982,0.123887032879163,1.59336734652624 predictedValues: Include Exclude Both Lung 70.0167306850888 41.4661010134361 51.3362520169355 cerebhem 68.9923808748697 43.3102324677567 57.5536137414766 cortex 92.095818403958 57.4374327610489 77.360657370756 heart 68.512661465552 46.3643557780192 52.834680917938 kidney 73.1555435569336 43.0607288282923 55.5488972016805 liver 75.5584993465289 43.9864196023068 53.6927516618497 stomach 70.2676589111397 47.8432058965085 53.6766911558599 testicle 74.2134156105548 43.9445881023239 53.4944360964984 diffExp=28.5506296716527,25.682148407113,34.6583856429092,22.1483056875328,30.0948147286413,31.5720797442221,22.4244530146312,30.2688275082309 diffExpScore=0.995583031931749 diffExp1.5=1,1,1,0,1,1,0,1 diffExp1.5Score=0.857142857142857 diffExp1.4=1,1,1,1,1,1,1,1 diffExp1.4Score=0.888888888888889 diffExp1.3=1,1,1,1,1,1,1,1 diffExp1.3Score=0.888888888888889 diffExp1.2=1,1,1,1,1,1,1,1 diffExp1.2Score=0.888888888888889 cont.predictedValues: Include Exclude Both Lung 51.2520620895863 61.3142785951563 54.0046456058238 cerebhem 53.021246806299 57.4803690878037 56.8081963089106 cortex 52.3703208604629 63.9805569356392 57.4048769890359 heart 54.8668294136808 53.7171503441769 53.9059080882131 kidney 51.7755619229074 58.8073377394728 52.4353139382431 liver 51.1669390638728 64.2147426813127 54.7170429668319 stomach 51.0258774085098 57.6100012779451 54.8679087992036 testicle 52.2661365788116 56.0851037345422 55.829946535224 cont.diffExp=-10.0622165055700,-4.45912228150477,-11.6102360751763,1.14967906950391,-7.03177581656544,-13.0478036174399,-6.58412386943526,-3.81896715573063 cont.diffExpScore=1.02301192101982 cont.diffExp1.5=0,0,0,0,0,0,0,0 cont.diffExp1.5Score=0 cont.diffExp1.4=0,0,0,0,0,0,0,0 cont.diffExp1.4Score=0 cont.diffExp1.3=0,0,0,0,0,0,0,0 cont.diffExp1.3Score=0 cont.diffExp1.2=0,0,-1,0,0,-1,0,0 cont.diffExp1.2Score=0.666666666666667 tran.correlation=0.838101232520611 cont.tran.correlation=-0.61744922482493 tran.covariance=0.00792063279720009 cont.tran.covariance=-0.000958724588637363 tran.mean=60.0141108315199 cont.tran.mean=55.6846571587612 weightedLogRatios: wLogRatio Lung 2.08851970967163 cerebhem 1.86298385094678 cortex 2.02392354974283 heart 1.57435804303235 kidney 2.13453313381029 liver 2.19353357915954 stomach 1.56063934044925 testicle 2.11960962472930 cont.weightedLogRatios: wLogRatio Lung -0.721757137467446 cerebhem -0.323896821437757 cortex -0.812662728239217 heart 0.0845862983669814 kidney -0.510742444117353 liver -0.919610200057614 stomach -0.484605349143996 testicle -0.281494564011338 varWeightedLogRatios=0.0638345540462368 cont.varWeightedLogRatios=0.106249469746801 coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 4.43361616518992 0.0637699868352645 69.5251227923753 0 *** df.mm.trans1 0.0264513156861623 0.0535700387866274 0.493770702528692 0.621585727818638 df.mm.trans2 -0.72688740673313 0.0479428762775612 -15.1615310379977 1.58911425499907e-46 *** df.mm.exp2 -0.0855452311967762 0.0608226285810166 -1.40647047312052 0.159921414853495 df.mm.exp3 0.189834116192602 0.0608226285810167 3.12111003127299 0.00185780631556471 ** df.mm.exp4 0.0611684219590685 0.0608226285810166 1.00568527513722 0.314830845659649 df.mm.exp5 0.00272235808355555 0.0608226285810166 0.0447589679543252 0.96430912291982 df.mm.exp6 0.0902968047843443 0.0608226285810166 1.48459227907369 0.137993650639325 df.mm.exp7 0.102048614647682 0.0608226285810166 1.67780671484383 0.0937237472228683 . df.mm.exp8 0.0750834617902808 0.0608226285810166 1.23446591411728 0.217343871230516 df.mm.trans1:exp2 0.070807084315676 0.0531878457575302 1.33126437642290 0.183431102444351 df.mm.trans2:exp2 0.129057903550804 0.0390292085438662 3.30670050369459 0.000980488973794096 *** df.mm.trans1:exp3 0.084261199979825 0.0531878457575302 1.58421907824487 0.113486788464809 df.mm.trans2:exp3 0.135985862888263 0.0390292085438662 3.48420754511136 0.000516828765920068 *** df.mm.trans1:exp4 -0.082884078136381 0.0531878457575302 -1.55832741401538 0.119498818759575 df.mm.trans2:exp4 0.0504862972325036 0.0390292085438662 1.29355165313589 0.196144301718703 df.mm.trans1:exp5 0.0411313266498354 0.0531878457575302 0.773321913381162 0.439530105455516 df.mm.trans2:exp5 0.0350128091982358 0.0390292085438662 0.897092472651189 0.369903752992856 df.mm.trans1:exp6 -0.0141238460481077 0.0531878457575302 -0.265546495575225 0.790647858680307 df.mm.trans2:exp6 -0.0312921142978467 0.0390292085438662 -0.801761436250404 0.422897554840238 df.mm.trans1:exp7 -0.0984711889000625 0.0531878457575302 -1.85138517075814 0.064433754745619 . df.mm.trans2:exp7 0.0410042552474639 0.0390292085438662 1.05060432371766 0.29371564071374 df.mm.trans1:exp8 -0.0168727478612109 0.0531878457575302 -0.317229389927343 0.751141371446508 df.mm.trans2:exp8 -0.0170302332335538 0.0390292085438662 -0.43634585145156 0.66268797427621 df.mm.trans1:probe2 -0.306891259886427 0.0403990689367686 -7.59649338371546 7.46176466186194e-14 *** df.mm.trans1:probe3 -0.206384210952278 0.0403990689367686 -5.10863780735403 3.94364130451193e-07 *** df.mm.trans1:probe4 -0.434380448495547 0.0403990689367686 -10.7522390967828 1.74337860165094e-25 *** df.mm.trans1:probe5 -0.672012033310821 0.0403990689367686 -16.6343445776593 1.55392090741478e-54 *** df.mm.trans1:probe6 -0.567523576955682 0.0403990689367686 -14.0479370414193 9.17926244888156e-41 *** df.mm.trans1:probe7 -0.550043621209492 0.0403990689367686 -13.6152548978394 1.33761906496159e-38 *** df.mm.trans1:probe8 -0.383790668439297 0.0403990689367686 -9.49998795863327 1.74997717187861e-20 *** df.mm.trans1:probe9 -0.558546657212024 0.0403990689367686 -13.8257309366769 1.20049489432709e-39 *** df.mm.trans1:probe10 -0.620554911900826 0.0403990689367686 -15.3606240993350 1.3907232982898e-47 *** df.mm.trans1:probe11 -0.685722810654272 0.0403990689367686 -16.9737280759501 1.94411424990600e-56 *** df.mm.trans1:probe12 -0.613450347915756 0.0403990689367686 -15.1847645022688 1.19707041916896e-46 *** df.mm.trans1:probe13 -0.674380160830169 0.0403990689367686 -16.6929629463909 7.31539630905228e-55 *** df.mm.trans1:probe14 -0.546364709402712 0.0403990689367686 -13.5241906257262 3.76753594258194e-38 *** df.mm.trans1:probe15 -0.576618598765809 0.0403990689367686 -14.2730665320113 6.60731997284052e-42 *** df.mm.trans2:probe2 -0.00136598922811559 0.0403990689367686 -0.0338123938017878 0.973034071137419 df.mm.trans2:probe3 0.119479957271126 0.0403990689367686 2.95749284366263 0.00318067046432112 ** df.mm.trans2:probe4 0.0992892283244159 0.0403990689367686 2.45771080714311 0.0141656620962864 * df.mm.trans2:probe5 0.159064891198411 0.0403990689367686 3.93734052255944 8.85940719184783e-05 *** df.mm.trans2:probe6 0.0953667026677295 0.0403990689367686 2.36061635026774 0.0184519215776011 * df.mm.trans3:probe2 -0.0144414324612627 0.0403990689367686 -0.35746943781962 0.720822210825573 df.mm.trans3:probe3 -0.0742647837886277 0.0403990689367686 -1.838279587702 0.066342756597876 . df.mm.trans3:probe4 0.152746910871835 0.0403990689367686 3.78095126674602 0.000166284411462027 *** df.mm.trans3:probe5 0.0232838999461302 0.0403990689367686 0.57634743965445 0.564521028245645 df.mm.trans3:probe6 0.62960023084188 0.0403990689367686 15.5845232925371 8.78853117860717e-49 *** df.mm.trans3:probe7 0.543593218555447 0.0403990689367686 13.4555877861013 8.1948831222869e-38 *** df.mm.trans3:probe8 0.324414654663693 0.0403990689367686 8.03025077561704 2.95494567173263e-15 *** df.mm.trans3:probe9 0.165543604159914 0.0403990689367686 4.09770840063214 4.53995059148544e-05 *** df.mm.trans3:probe10 0.1644420472615 0.0403990689367686 4.07044151237445 5.09482778584367e-05 *** df.mm.trans3:probe11 0.110427451655988 0.0403990689367686 2.73341575838853 0.00638814343742449 ** df.mm.trans3:probe12 0.0467778116130702 0.0403990689367686 1.15789330903357 0.247207430631156 df.mm.trans3:probe13 0.640833923944985 0.0403990689367686 15.8625914114011 2.75809597096447e-50 *** df.mm.trans3:probe14 0.26095890452582 0.0403990689367686 6.45952769194421 1.69771254349651e-10 *** df.mm.trans3:probe15 0.325058280271247 0.0403990689367686 8.04618246970044 2.61694970008336e-15 *** df.mm.trans3:probe16 0.0843987920831685 0.0403990689367686 2.08912715823394 0.0369699583207028 * df.mm.trans3:probe17 0.152930421392113 0.0403990689367686 3.78549371104256 0.000163321835821085 *** df.mm.trans3:probe18 0.145359027298462 0.0403990689367686 3.59807864696025 0.000337630975601135 *** df.mm.trans3:probe19 0.104514123381594 0.0403990689367686 2.58704287331908 0.00983244864211848 ** df.mm.trans3:probe20 0.318164822963289 0.0403990689367686 7.87554840586228 9.51108618290426e-15 *** cont.coeff: Name Estimate Std-Error t-value Pr(>|t|) Signif df.mm.(Intercept) 3.93228544947363 0.116386495494558 33.786440881859 1.79326396193527e-163 *** df.mm.trans1 -0.0264003970567176 0.0977705875020704 -0.270023917532035 0.787202278866981 df.mm.trans2 0.198283734469479 0.0875004626908417 2.26608783967302 0.0236770960516188 * df.mm.exp2 -0.0812429439247008 0.111007276912233 -0.731870433944027 0.464433634125852 df.mm.exp3 0.00309148361830011 0.111007276912233 0.0278493780254097 0.977788309870186 df.mm.exp4 -0.0622973204425375 0.111007276912233 -0.561200330062977 0.574797344572369 df.mm.exp5 -0.00209392155190581 0.111007276912233 -0.0188629215142476 0.984954539710838 df.mm.exp6 0.0314526645831421 0.111007276912233 0.283338763529979 0.776980770959844 df.mm.exp7 -0.0825980743894401 0.111007276912233 -0.744078016207402 0.457018863118455 df.mm.exp8 -0.102790003880660 0.111007276912233 -0.925975366118838 0.354701086552616 df.mm.trans1:exp2 0.115179807178920 0.0970730476488164 1.18652715628759 0.23571982977985 df.mm.trans2:exp2 0.0166736806742766 0.071232142733247 0.234075236746939 0.814978535278186 df.mm.trans1:exp3 0.0184926983498710 0.0970730476488164 0.19050291298953 0.848956997191132 df.mm.trans2:exp3 0.0394750101124075 0.071232142733247 0.554174121368707 0.57959406962657 df.mm.trans1:exp4 0.130450433137031 0.0970730476488164 1.34383782416068 0.179331434483028 df.mm.trans2:exp4 -0.0699831013616909 0.071232142733247 -0.982465200067987 0.326128449873076 df.mm.trans1:exp5 0.0122563288418069 0.0970730476488164 0.126258824036791 0.899554575978009 df.mm.trans2:exp5 -0.0396521854340921 0.071232142733247 -0.556661415936668 0.577893867733606 df.mm.trans1:exp6 -0.0331149156177154 0.0970730476488164 -0.341133985383008 0.733080440279581 df.mm.trans2:exp6 0.0147674109384524 0.071232142733247 0.207313866631163 0.835810523664553 df.mm.trans1:exp7 0.0781751254932452 0.0970730476488164 0.805322665628685 0.420841135728943 df.mm.trans2:exp7 0.0202815147240252 0.071232142733247 0.284724198175201 0.775919388342894 df.mm.trans1:exp8 0.122382827986962 0.0970730476488164 1.26072922351948 0.207725361050768 df.mm.trans2:exp8 0.0136475049788525 0.071232142733247 0.191591947892964 0.848104034650992 df.mm.trans1:probe2 0.060524354923148 0.0737322726275588 0.820866531930632 0.411934479752973 df.mm.trans1:probe3 0.0637930893228837 0.0737322726275587 0.865199010548875 0.387154625432052 df.mm.trans1:probe4 0.065416792568678 0.0737322726275587 0.887220619105498 0.375191503314491 df.mm.trans1:probe5 0.0623003899056613 0.0737322726275588 0.844954152171019 0.398355639754887 df.mm.trans1:probe6 0.109016900645626 0.0737322726275587 1.47855066391753 0.139601985069517 df.mm.trans1:probe7 0.0295704605549116 0.0737322726275587 0.401051798637482 0.688474912073434 df.mm.trans1:probe8 0.0876846326555805 0.0737322726275587 1.18923002819266 0.234655335932825 df.mm.trans1:probe9 0.0996246317598712 0.0737322726275587 1.35116724616779 0.176973317211470 df.mm.trans1:probe10 0.110450881550567 0.0737322726275587 1.49799914765253 0.134475741829118 df.mm.trans1:probe11 0.130569737265008 0.0737322726275587 1.7708627797837 0.0769138692179709 . df.mm.trans1:probe12 0.0600434651993084 0.0737322726275588 0.814344425576082 0.415657940938731 df.mm.trans1:probe13 0.0718715428595979 0.0737322726275587 0.974763699779608 0.329933156412636 df.mm.trans1:probe14 0.115661037423684 0.0737322726275587 1.56866231436970 0.117069754964086 df.mm.trans1:probe15 0.0139501073941665 0.0737322726275587 0.189199476661084 0.849978117742693 df.mm.trans2:probe2 -0.124207512808999 0.0737322726275587 -1.68457458834077 0.0924091133948898 . df.mm.trans2:probe3 -0.0643280591297734 0.0737322726275587 -0.872454582469084 0.383187578765903 df.mm.trans2:probe4 -0.144973915181525 0.0737322726275587 -1.96622062517762 0.0495728025634879 * df.mm.trans2:probe5 -0.109113589113568 0.0737322726275587 -1.47986200920090 0.139251670459171 df.mm.trans2:probe6 0.0641556791155768 0.0737322726275588 0.87011666437632 0.38446312386815 df.mm.trans3:probe2 -0.151632322140472 0.0737322726275587 -2.05652581612949 0.0400128152266824 * df.mm.trans3:probe3 -0.209641786077115 0.0737322726275588 -2.84328393261484 0.00456378177922187 ** df.mm.trans3:probe4 -0.0741326537584933 0.0737322726275587 -1.00543020195454 0.314953533566944 df.mm.trans3:probe5 0.00559651224762956 0.0737322726275587 0.0759031567614771 0.939512611585377 df.mm.trans3:probe6 -0.113519885255646 0.0737322726275587 -1.53962276232912 0.12399544324039 df.mm.trans3:probe7 -0.0789555286268158 0.0737322726275587 -1.0708408382533 0.284521234431628 df.mm.trans3:probe8 -0.075486750196086 0.0737322726275587 -1.02379524604361 0.306200531671026 df.mm.trans3:probe9 -0.115359356434227 0.0737322726275588 -1.56457074118599 0.118026733392189 df.mm.trans3:probe10 -0.165487715848154 0.0737322726275588 -2.24444073064283 0.0250405461033892 * df.mm.trans3:probe11 -0.127495880465969 0.0737322726275587 -1.72917334462189 0.0841127972397888 . df.mm.trans3:probe12 -0.203301294277962 0.0737322726275587 -2.75729049211451 0.00594342841443606 ** df.mm.trans3:probe13 -0.163093358587368 0.0737322726275587 -2.21196706374692 0.0272134586332399 * df.mm.trans3:probe14 0.0083906842127703 0.0737322726275587 0.113799343404941 0.909421633630161 df.mm.trans3:probe15 -0.12591904600243 0.0737322726275587 -1.70778739777194 0.0880124286730006 . df.mm.trans3:probe16 -0.211515718793143 0.0737322726275587 -2.86869929890219 0.00421570503024051 ** df.mm.trans3:probe17 -0.0613890458958186 0.0737322726275587 -0.832593974227689 0.405289365286119 df.mm.trans3:probe18 -0.152393563074144 0.0737322726275587 -2.06685020878068 0.0390269478245943 * df.mm.trans3:probe19 -0.111607649371688 0.0737322726275587 -1.51368790618252 0.130447716300140 df.mm.trans3:probe20 -0.175029927354525 0.0737322726275588 -2.37385775749308 0.0178073279609117 *