Improbizer Results

Improbizer will display the results in parts. First it will display the profiles (consensus sequences with the probability of each base at each position) individually as they are calculated. The position of a profile in a sequence is indicated by upper case. The strength of the profile match is indicated by the score on the left. There will be a delay during this phase as each profile is calculated. Second Improbizer will display all profiles at once over each sequence. Each profile has it's own color and the stronger the profile matches the darker it will appear in the sequence. Finally there will be a graphic summary of all the profiles at the end, using the same color conventions.

Looking for 4 motifs in 2 sequences. Longest sequence is 150 bases.

Settings are use location; don't include reverse complement; 1 occurrences per sequence; right align; restrain expansionist tendencies 6.000000; number of sequences in initial scan 20; background model m2; background data fa/mm2.control.gold.down.fa;

11.8723 @ 84.50 sd 1.50 CTAGACT
	a  0.003 0.003 0.990 0.003 0.990 0.003 0.003 
	c  0.990 0.497 0.003 0.003 0.003 0.990 0.003 
	g  0.003 0.003 0.003 0.990 0.003 0.003 0.003 
	t  0.003 0.497 0.003 0.003 0.003 0.003 0.990 
11.63 1 gtgatacatatttcttttttgccgacaggctaactggaagtagcttcttcttgggatatggaaagacatgatcccccgagaggCCAGACTatatgcattatagataggaaagctcattctttcatctgacaagattttgaaaaggggggc
12.11 2 ttcctattccctttaccaccttgggaagcctcaatgttgagcaggactcccaacaagtctacacggttgggacactcctgtgggccCTAGACTtatgaagaccttgtgccagtaaagtaagtgtcctctgtgtagctgtgcacacgtcta
11.8245 @ 62.50 sd 2.50 ACATGAT
	a  0.990 0.003 0.990 0.003 0.003 0.497 0.003 
	c  0.003 0.990 0.003 0.497 0.003 0.003 0.003 
	g  0.003 0.003 0.003 0.003 0.990 0.497 0.003 
	t  0.003 0.003 0.003 0.497 0.003 0.003 0.990 
10.85 1 gtgatacatatttcttttttgccgacaggctaactggaagtagcttcttcttgggatatggaaagACATGATcccccgagaggccagactatatgcattatagataggaaagctcattctttcatctgacaagattttgaaaaggggggc
12.80 2 ttcctattccctttaccaccttgggaagcctcaatgttgagcaggactcccaacaagtctACACGGTtgggacactcctgtgggccctagacttatgaagaccttgtgccagtaaagtaagtgtcctctgtgtagctgtgcacacgtcta
11.1912 @ 2.00 sd 2.00 TTCCTAT
	a  0.003 0.497 0.003 0.497 0.003 0.990 0.003 
	c  0.003 0.003 0.990 0.497 0.003 0.003 0.003 
	g  0.003 0.003 0.003 0.003 0.003 0.003 0.003 
	t  0.990 0.497 0.003 0.003 0.990 0.003 0.990 
11.47 1 gtgaTACATATttcttttttgccgacaggctaactggaagtagcttcttcttgggatatggaaagacatgatcccccgagaggccagactatatgcattatagataggaaagctcattctttcatctgacaagattttgaaaaggggggc
10.92 2 TTCCTATtccctttaccaccttgggaagcctcaatgttgagcaggactcccaacaagtctacacggttgggacactcctgtgggccctagacttatgaagaccttgtgccagtaaagtaagtgtcctctgtgtagctgtgcacacgtcta
11.0760 @ 16.00 sd 3.00 TACCACC
	a  0.003 0.497 0.003 0.003 0.497 0.497 0.003 
	c  0.003 0.003 0.990 0.990 0.003 0.497 0.990 
	g  0.003 0.497 0.003 0.003 0.497 0.003 0.003 
	t  0.990 0.003 0.003 0.003 0.003 0.003 0.003 
11.94 1 gtgatacatatttctttttTGCCGACaggctaactggaagtagcttcttcttgggatatggaaagacatgatcccccgagaggccagactatatgcattatagataggaaagctcattctttcatctgacaagattttgaaaaggggggc
10.22 2 ttcctattcccttTACCACCttgggaagcctcaatgttgagcaggactcccaacaagtctacacggttgggacactcctgtgggccctagacttatgaagaccttgtgccagtaaagtaagtgtcctctgtgtagctgtgcacacgtcta
Color Coding for Profiles
11.8723 @ 84.50 sd 1.50 CTAGACT
	a  0.003 0.003 0.990 0.003 0.990 0.003 0.003 
	c  0.990 0.497 0.003 0.003 0.003 0.990 0.003 
	g  0.003 0.003 0.003 0.990 0.003 0.003 0.003 
	t  0.003 0.497 0.003 0.003 0.003 0.003 0.990 
11.8245 @ 62.50 sd 2.50 ACATGAT
	a  0.990 0.003 0.990 0.003 0.003 0.497 0.003 
	c  0.003 0.990 0.003 0.497 0.003 0.003 0.003 
	g  0.003 0.003 0.003 0.003 0.990 0.497 0.003 
	t  0.003 0.003 0.003 0.497 0.003 0.003 0.990 
11.1912 @ 2.00 sd 2.00 TTCCTAT
	a  0.003 0.497 0.003 0.497 0.003 0.990 0.003 
	c  0.003 0.003 0.990 0.497 0.003 0.003 0.003 
	g  0.003 0.003 0.003 0.003 0.003 0.003 0.003 
	t  0.990 0.497 0.003 0.003 0.990 0.003 0.990 
11.0760 @ 16.00 sd 3.00 TACCACC
	a  0.003 0.497 0.003 0.003 0.497 0.497 0.003 
	c  0.003 0.003 0.990 0.990 0.003 0.497 0.990 
	g  0.003 0.497 0.003 0.003 0.497 0.003 0.003 
	t  0.990 0.003 0.003 0.003 0.003 0.003 0.003 
Colored Text View of Profiles
Different colors represent different profiles. Darker colors
represent stronger matches to profile.

1 gtgatacatatttcttttttgccgacaggctaactggaagtagcttcttcttgggatatggaaagacatgatcccccgagaggccagactatatgcattatagataggaaagctcattctttcatctgacaagattttgaaaaggggggc
2 ttcctattccctttaccaccttgggaagcctcaatgttgagcaggactcccaacaagtctacacggttgggacactcctgtgggccctagacttatgaagaccttgtgccagtaaagtaagtgtcctctgtgtagctgtgcacacgtcta
Graphical Summary of Profile Hits
Colors represent different profiles. Darker colors represent
stronger matches to profile.