Improbizer Results

Improbizer will display the results in parts. First it will display the profiles (consensus sequences with the probability of each base at each position) individually as they are calculated. The position of a profile in a sequence is indicated by upper case. The strength of the profile match is indicated by the score on the left. There will be a delay during this phase as each profile is calculated. Second Improbizer will display all profiles at once over each sequence. Each profile has it's own color and the stronger the profile matches the darker it will appear in the sequence. Finally there will be a graphic summary of all the profiles at the end, using the same color conventions.

Looking for 4 motifs in 7 sequences. Longest sequence is 150 bases.

Settings are use location; don't include reverse complement; 1 occurrences per sequence; right align; restrain expansionist tendencies 6.000000; number of sequences in initial scan 1000; background model m2; background data fa/mm2.control.gold.down.fa;

7.9421 @ 26.98 sd 6.06 ATCCTGG
	a  0.849 0.144 0.143 0.003 0.003 0.144 0.145 
	c  0.003 0.143 0.850 0.990 0.286 0.145 0.144 
	g  0.144 0.003 0.003 0.003 0.286 0.708 0.708 
	t  0.003 0.709 0.003 0.003 0.425 0.003 0.003 
10.81 G6937984@J914178@j_at.+.chr11:101826004-101826154   gtaagacccgagccttcatgtctATCCGGGgcttctctcttcccatccttgtgctcactctgtccaccctaccgcaccccggggccacacacatgacactgtgcatcctgcatctcactggccatgtctaactagtctgtgagcctgcat
 9.20 G6877982@J919323@j_at.+.chr14:111661838-111661988   gtttgctccttttaaagcttttctttcacaaATCCCGAactctaaatgagtgctgatatttaaaaaaaaaattctcggtgagaatttttttttcatgtttatccatccaattttattttttaattagttctatagcaagcatttgtggac
 8.92 G7152783@J923012@j_at.+.chr17:27896827-27896977     gtacgtggtggttttcgggagATCCTGGaacataggaaacgatgctttttagctttccttaacaccgggtgggggaggggggtaggagtgggggggggcctattttagttccactatggctctccctgtcttgcctggaactcaacaaat
 6.66 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctGTCCTGGgggctggtgttaagggtatctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
 7.15 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcAACCGACaattttatatttgttgttttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
 4.58 G7227059@J946649@j_at.+.chr9:55123824-55123974      gtttgctgtctttcaagcatttgggtctttcagacatACACTGGggaagtgagtttctctgtgagagatactctctttaaaaaaaaaaaaaccaattcttactgttttcctcaatgatttctcatattcaggttcagacagtaactttaa
 8.29 G7263608@J948791@j_at.+.chrX:57499729-57499879      gtacagagcatagctctgaATCCCCGcattgtttgggctggaactataggttccttgtcacccttgatggcctgccttcttacagaaaatcaccgtgctgattgggaagcccttcagtacactccctgtgcttgagcggctccgggcaga
7.4735 @ 118.84 sd 8.67 TTAGTTC
	a  0.003 0.003 0.849 0.003 0.145 0.286 0.003 
	c  0.143 0.286 0.145 0.003 0.003 0.143 0.851 
	g  0.003 0.144 0.003 0.849 0.003 0.003 0.003 
	t  0.851 0.567 0.003 0.144 0.849 0.568 0.143 
 4.30 G6937984@J914178@j_at.+.chr11:101826004-101826154   gtaagacccgagccttcatgtctatccggggcttctctcttcccatccttgtgctcactctgtccaccctaccgcaccccggggccacacacatgacactgtgcatcctgcatctcactggccatgtctaaCTAGTCTgtgagcctgcat
 9.95 G6877982@J919323@j_at.+.chr14:111661838-111661988   gtttgctccttttaaagcttttctttcacaaatcccgaactctaaatgagtgctgatatttaaaaaaaaaattctcggtgagaatttttttttcatgtttatccatccaattttattttttaaTTAGTTCtatagcaagcatttgtggac
 7.92 G7152783@J923012@j_at.+.chr17:27896827-27896977     gtacgtggtggttttcgggagatcctggaacataggaaacgatgctttttagctttccttaacaccgggtgggggaggggggtaggagtgggggggggcctattTTAGTTCcactatggctctccctgtcttgcctggaactcaacaaat
 8.01 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggTTCGAACctcagatatgggtggttatgccac
 7.92 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccattTCAGTTCaagttagcttgtgcc
 6.14 G7227059@J946649@j_at.+.chr9:55123824-55123974      gtttgctgtctttcaagcatttgggtctttcagacatacactggggaagtgagtttctctgtgagagatactctctttaaaaaaaaaaaaaccaattcttactgttttcctcaaTGATTTCtcatattcaggttcagacagtaactttaa
 8.07 G7263608@J948791@j_at.+.chrX:57499729-57499879      gtacagagcatagctctgaatccccgcattgtttgggctggaactataggttccttgtcacccttgatggcctgccttcttacagaaaatcaccgtgctgattgggaagccctTCAGTACactccctgtgcttgagcggctccgggcaga
6.9995 @ 26.00 sd 17.74 AAAGCTT
	a  0.426 0.567 0.849 0.003 0.003 0.144 0.003 
	c  0.426 0.003 0.003 0.003 0.708 0.144 0.003 
	g  0.144 0.144 0.003 0.990 0.285 0.003 0.003 
	t  0.003 0.285 0.144 0.003 0.003 0.708 0.990 
 6.17 G6937984@J914178@j_at.+.chr11:101826004-101826154   gtaagaccCGAGCCTtcatgtctatccggggcttctctcttcccatccttgtgctcactctgtccaccctaccgcaccccggggccacacacatgacactgtgcatcctgcatctcactggccatgtctaactagtctgtgagcctgcat
 7.74 G6877982@J919323@j_at.+.chr14:111661838-111661988   gtttgctccttttAAAGCTTttctttcacaaatcccgaactctaaatgagtgctgatatttaaaaaaaaaattctcggtgagaatttttttttcatgtttatccatccaattttattttttaattagttctatagcaagcatttgtggac
 6.92 G7152783@J923012@j_at.+.chr17:27896827-27896977     gtacgtggtggttttcgggagatcctggaacataggaaacGATGCTTtttagctttccttaacaccgggtgggggaggggggtaggagtgggggggggcctattttagttccactatggctctccctgtcttgcctggaactcaacaaat
 7.28 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataATAGCTTttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
 6.82 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttCAAGGTTaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
 6.95 G7227059@J946649@j_at.+.chr9:55123824-55123974      gtttgctgtctttCAAGCATttgggtctttcagacatacactggggaagtgagtttctctgtgagagatactctctttaaaaaaaaaaaaaccaattcttactgttttcctcaatgatttctcatattcaggttcagacagtaactttaa
 7.12 G7263608@J948791@j_at.+.chrX:57499729-57499879      gtacagagcatagctctgaatccccgcattgtttgggctggaactATAGGTTccttgtcacccttgatggcctgccttcttacagaaaatcaccgtgctgattgggaagcccttcagtacactccctgtgcttgagcggctccgggcaga
7.0376 @ 71.30 sd 10.22 CACCGTG
	a  0.003 0.427 0.285 0.003 0.285 0.144 0.003 
	c  0.990 0.003 0.708 0.568 0.144 0.144 0.003 
	g  0.003 0.144 0.003 0.144 0.567 0.144 0.990 
	t  0.003 0.426 0.003 0.285 0.003 0.567 0.003 
 7.06 G6937984@J914178@j_at.+.chr11:101826004-101826154   gtaagacccgagccttcatgtctatccggggcttctctcttcccatccttgtgctcactctgtccaccctaccgCACCCCGgggccacacacatgacactgtgcatcctgcatctcactggccatgtctaactagtctgtgagcctgcat
 8.22 G6877982@J919323@j_at.+.chr14:111661838-111661988   gtttgctccttttaaagcttttctttcacaaatcccgaactctaaatgagtgctgatatttaaaaaaaaaattCTCGGTGagaatttttttttcatgtttatccatccaattttattttttaattagttctatagcaagcatttgtggac
 7.96 G7152783@J923012@j_at.+.chr17:27896827-27896977     gtacgtggtggttttcgggagatcctggaacataggaaacgatgctttttagctttccttaaCACCGGGtgggggaggggggtaggagtgggggggggcctattttagttccactatggctctccctgtcttgcctggaactcaacaaat
 6.28 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttgCGACAAGgcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
 6.42 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttcaaggttaatgttaCTATATGgtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
 5.16 G7227059@J946649@j_at.+.chr9:55123824-55123974      gtttgctgtctttcaagcatttgggtctttcagacatacactggggaagtgagtttCTCTGTGagagatactctctttaaaaaaaaaaaaaccaattcttactgttttcctcaatgatttctcatattcaggttcagacagtaactttaa
 8.17 G7263608@J948791@j_at.+.chrX:57499729-57499879      gtacagagcatagctctgaatccccgcattgtttgggctggaactataggttccttgtcacccttgatggcctgccttcttacagaaaatCACCGTGctgattgggaagcccttcagtacactccctgtgcttgagcggctccgggcaga
Color Coding for Profiles
7.9421 @ 26.98 sd 6.06 ATCCTGG
	a  0.849 0.144 0.143 0.003 0.003 0.144 0.145 
	c  0.003 0.143 0.850 0.990 0.286 0.145 0.144 
	g  0.144 0.003 0.003 0.003 0.286 0.708 0.708 
	t  0.003 0.709 0.003 0.003 0.425 0.003 0.003 
7.4735 @ 118.84 sd 8.67 TTAGTTC
	a  0.003 0.003 0.849 0.003 0.145 0.286 0.003 
	c  0.143 0.286 0.145 0.003 0.003 0.143 0.851 
	g  0.003 0.144 0.003 0.849 0.003 0.003 0.003 
	t  0.851 0.567 0.003 0.144 0.849 0.568 0.143 
6.9995 @ 26.00 sd 17.74 AAAGCTT
	a  0.426 0.567 0.849 0.003 0.003 0.144 0.003 
	c  0.426 0.003 0.003 0.003 0.708 0.144 0.003 
	g  0.144 0.144 0.003 0.990 0.285 0.003 0.003 
	t  0.003 0.285 0.144 0.003 0.003 0.708 0.990 
7.0376 @ 71.30 sd 10.22 CACCGTG
	a  0.003 0.427 0.285 0.003 0.285 0.144 0.003 
	c  0.990 0.003 0.708 0.568 0.144 0.144 0.003 
	g  0.003 0.144 0.003 0.144 0.567 0.144 0.990 
	t  0.003 0.426 0.003 0.285 0.003 0.567 0.003 
Colored Text View of Profiles
Different colors represent different profiles. Darker colors
represent stronger matches to profile.

G6937984@J914178@j_at.+.chr11:101826004-101826154   gtaagacccgagccttcatgtctatccggggcttctctcttcccatccttgtgctcactctgtccaccctaccgcaccccggggccacacacatgacactgtgcatcctgcatctcactggccatgtctaactagtctgtgagcctgcat
G6877982@J919323@j_at.+.chr14:111661838-111661988   gtttgctccttttaaagcttttctttcacaaatcccgaactctaaatgagtgctgatatttaaaaaaaaaattctcggtgagaatttttttttcatgtttatccatccaattttattttttaattagttctatagcaagcatttgtggac
G7152783@J923012@j_at.+.chr17:27896827-27896977     gtacgtggtggttttcgggagatcctggaacataggaaacgatgctttttagctttccttaacaccgggtgggggaggggggtaggagtgggggggggcctattttagttccactatggctctccctgtcttgcctggaactcaacaaat
G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
G7227059@J946649@j_at.+.chr9:55123824-55123974      gtttgctgtctttcaagcatttgggtctttcagacatacactggggaagtgagtttctctgtgagagatactctctttaaaaaaaaaaaaaccaattcttactgttttcctcaatgatttctcatattcaggttcagacagtaactttaa
G7263608@J948791@j_at.+.chrX:57499729-57499879      gtacagagcatagctctgaatccccgcattgtttgggctggaactataggttccttgtcacccttgatggcctgccttcttacagaaaatcaccgtgctgattgggaagcccttcagtacactccctgtgcttgagcggctccgggcaga
Graphical Summary of Profile Hits
Colors represent different profiles. Darker colors represent
stronger matches to profile.