| File | Score | motif | Controls |
| fa/ms.mm2.inc_1.5.down.fa | 5.6995 | GTATGAT | 5.640516 (5.3323-6.0483 N=100) |
| fa/ms.mm2.inc_1.5.up.fa | 5.8180 | CTCTGCCT | 5.675822 (5.3038-6.1262 N=100) |
| fa/ms.mm2.inc_2.down.fa | 6.4056 | GTATGAT | 5.959513 (5.6024-6.6218 N=100) |
| fa/ms.mm2.inc_2.up.fa | 6.1067 | GGCTTCAA | 5.911806 (5.6166-6.3501 N=100) |
| fa/ms.mm2.skip_1.5.down.fa | 7.0570 | ACCCCGG | 7.217034 (6.6814-7.9556 N=100) |
| fa/ms.mm2.skip_1.5.up.fa | 7.1105 | CATACTA | 7.199503 (6.6481-8.5100 N=100) |
| fa/ms.mm2.skip_2.down.fa | 8.5653 | GAGGCAA | 9.180794 (8.0494-10.6344 N=100) |
| fa/ms.mm2.skip_2.up.fa | 9.9359 | TCTTCCC | 9.016881 (8.2607-10.2522 N=100) |