# /cluster/home/jill/chuck/mm5/pval/go/bg/kgJillIsoforms.tab 41208, /cluster/home/jill/chuck/mm5/pval/go/bg/kgMrnaGo.tab 92287, /cluster/home/jill/chuck/mm5/pval/go/bg/goKgAncestors.tab 3801, /cluster/home/jill/chuck/mm5/pval/go/bg/mm5.knownGene.out 5087 #a instance list : 22 #b referenced loci : 22 #c annotated loci : 16 #d hyper-geometric : n 16 hgN 14129 #e k hgK Exp k p-value term description 1 1 0 0.00113242 GO:0047372 acylglycerol lipase activity 2 51 0 0.00148414 GO:0016042 lipid catabolism 11 4537 5.1 0.00288258 GO:0003824 catalytic activity 1 3 0 0.00339366 GO:0043149 stress fiber formation 1 3 0 0.00339366 GO:0048041 focal adhesion formation 1 4 0 0.00452248 GO:0003997 acyl-CoA oxidase activity 1 4 0 0.00452248 GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors 1 5 0 0.0056501 GO:0004287 prolyl oligopeptidase activity 1 5 0 0.0056501 GO:0004396 hexokinase activity 3 350 0.3 0.00664057 GO:0006629 lipid metabolism 1 6 0 0.00677653 GO:0001725 stress fiber 1 7 0 0.00790175 GO:0051017 actin filament bundle formation 1 8 0 0.00902578 GO:0006635 fatty acid beta-oxidation 1 8 0 0.00902578 GO:0019905 syntaxin binding 1 9 0 0.0101486 GO:0000086 G2/M transition of mitotic cell cycle 1 9 0 0.0101486 GO:0009618 response to pathogenic bacteria 1 9 0 0.0101486 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 4 797 0.9 0.0106056 GO:0009056 catabolism 6 1795 2 0.0107441 GO:0016787 hydrolase activity 2 141 0.1 0.0108274 GO:0000287 magnesium ion binding 1 10 0 0.0112703 GO:0005913 cell-cell adherens junction 1 10 0 0.0112703 GO:0016358 dendrite morphogenesis 1 11 0 0.0123907 GO:0000149 SNARE binding 1 11 0 0.0123907 GO:0005158 insulin receptor binding 1 11 0 0.0123907 GO:0007586 digestion 1 11 0 0.0123907 GO:0008645 hexose transport 1 11 0 0.0123907 GO:0015749 monosaccharide transport 1 11 0 0.0123907 GO:0015758 glucose transport 1 13 0 0.0146281 GO:0019395 fatty acid oxidation 1 13 0 0.0146281 GO:0045121 lipid raft 1 14 0 0.0157449 GO:0005924 cell-substrate adherens junction 14 8414 9.5 0.0167727 GO:0007582 physiological process 1 15 0 0.0168606 GO:0004722 protein serine/threonine phosphatase activity 1 15 0 0.0168606 GO:0004759 serine esterase activity 1 15 0 0.0168606 GO:0008286 insulin receptor signaling pathway 1 16 0 0.0179751 GO:0006289 nucleotide-excision repair 1 16 0 0.0179751 GO:0030055 cell-matrix junction 1 18 0 0.0202006 GO:0007015 actin filament organization 1 20 0 0.0224214 GO:0004091 carboxylesterase activity 1 20 0 0.0224214 GO:0019200 carbohydrate kinase activity 1 21 0 0.02353 GO:0008287 protein serine/threonine phosphatase complex 1 22 0 0.0246374 GO:0019901 protein kinase binding 11 5837 6.6 0.0248099 GO:0008152 metabolism 1 24 0 0.0268487 GO:0019900 kinase binding 3 594 0.6 0.0275096 GO:0016788 hydrolase activity, acting on ester bonds 1 25 0 0.0279526 GO:0009617 response to bacteria 1 27 0 0.0301569 GO:0008643 carbohydrate transport 1 28 0 0.0312572 GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 2 264 0.2 0.0351287 GO:0016567 protein ubiquitination 1 32 0 0.035647 GO:0005912 adherens junction 2 268 0.3 0.0361085 GO:0000151 ubiquitin ligase complex 4 1161 1.3 0.0371304 GO:0006464 protein modification 2 307 0.3 0.04621 GO:0004842 ubiquitin-protein ligase activity 1 42 0 0.0465401 GO:0030145 manganese ion binding 5 1874 2.1 0.0506365 GO:0046872 metal ion binding 2 326 0.3 0.0514733 GO:0016881 acid-D-amino acid ligase activity 1 48 0 0.0530205 GO:0006096 glycolysis 2 337 0.3 0.054617 GO:0006118 electron transport 1 51 0 0.0562451 GO:0005941 unlocalized 1 53 0 0.0583892 GO:0019899 enzyme binding 1 54 0 0.0594595 GO:0005777 peroxisome 1 54 0 0.0594595 GO:0042579 microbody 1 55 0 0.0605287 GO:0007160 cell-matrix adhesion 2 358 0.4 0.060807 GO:0015031 protein transport 2 360 0.4 0.061409 GO:0016879 ligase activity, forming carbon-nitrogen bonds 1 56 0 0.0615967 GO:0006007 glucose catabolism 1 57 0 0.0626636 GO:0019320 hexose catabolism 1 57 0 0.0626636 GO:0046164 alcohol catabolism 1 57 0 0.0626636 GO:0046365 monosaccharide catabolism 2 368 0.4 0.0638383 GO:0006512 ubiquitin cycle 1 63 0 0.0690412 GO:0030036 actin cytoskeleton organization and biogenesis 1 64 0 0.0701001 GO:0016052 carbohydrate catabolism 5 2064 2.3 0.0718858 GO:0005515 protein binding 1 67 0 0.0732702 GO:0030029 actin filament-based process 1 74 0 0.0806278 GO:0005516 calmodulin binding 1 75 0 0.0816744 GO:0006006 glucose metabolism 1 75 0 0.0816744 GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway 1 83 0 0.0900071 GO:0016789 carboxylic ester hydrolase activity 1 86 0 0.0931135 GO:0006725 aromatic compound metabolism 2 460 0.5 0.0939969 GO:0016874 ligase activity 1 88 0 0.095179 GO:0006092 main pathways of carbohydrate metabolism 1 3170 3.5 0.0964583 u GO:0007154 cell communication 1 90 0.1 0.09724 GO:0008047 enzyme activator activity 1 91 0.1 0.0982688 GO:0019318 hexose metabolism 1 92 0.1 0.0992966 GO:0006631 fatty acid metabolism 1 93 0.1 0.100323 GO:0005996 monosaccharide metabolism 1 95 0.1 0.102373 GO:0007283 spermatogenesis 1 95 0.1 0.102373 GO:0048232 male gamete generation 1 96 0.1 0.103397 GO:0005911 intercellular junction 2 514 0.5 0.113343 GO:0005856 cytoskeleton 2 517 0.5 0.114448 GO:0006950 response to stress 3 1067 1.2 0.115153 GO:0005524 ATP binding 1 110 0.1 0.11761 GO:0006470 protein amino acid dephosphorylation 3 1078 1.2 0.117854 GO:0030554 adenyl nucleotide binding 5 2384 2.6 0.118005 GO:0019538 protein metabolism 1 111 0.1 0.118617 GO:0016327 apicolateral plasma membrane 1 112 0.1 0.119623 GO:0016311 dephosphorylation 1 114 0.1 0.121631 GO:0015980 energy derivation by oxidation of organic compounds 1 118 0.1 0.125636 GO:0000278 mitotic cell cycle 1 118 0.1 0.125636 GO:0007167 enzyme linked receptor protein signaling pathway 1 119 0.1 0.126635 GO:0030054 cell junction 1 120 0.1 0.127632 GO:0006091 energy pathways 1 125 0.1 0.132603 GO:0006281 DNA repair 1 128 0.1 0.135573 GO:0004721 phosphoprotein phosphatase activity 1 130 0.1 0.137548 GO:0015629 actin cytoskeleton 2 586 0.6 0.140644 GO:0016773 phosphotransferase activity, alcohol group as acceptor 4 5831 6.6 0.142022 u GO:0009987 cellular process 2 599 0.6 0.145729 GO:0016491 oxidoreductase activity 3 1221 1.3 0.155175 GO:0046914 transition metal ion binding 1 2728 3 0.155841 u GO:0007165 signal transduction 1 149 0.1 0.156097 GO:0006974 response to DNA damage stimulus 2 632 0.7 0.158823 GO:0005739 mitochondrion 8 9173 10.3 0.1609 u GO:0005623 cell 1 157 0.1 0.163795 GO:0004252 serine-type endopeptidase activity 1 157 0.1 0.163795 GO:0009719 response to endogenous stimulus 1 2672 3 0.165173 u GO:0003676 nucleic acid binding 1 159 0.1 0.165709 GO:0006066 alcohol metabolism 2 669 0.7 0.173785 GO:0006793 phosphorus metabolism 2 669 0.7 0.173785 GO:0006796 phosphate metabolism 1 169 0.1 0.175218 GO:0008236 serine-type peptidase activity 5 2707 3 0.177088 GO:0005737 cytoplasm 1 178 0.2 0.183689 GO:0007276 gametogenesis 3 4555 5.1 0.189678 u GO:0016020 membrane 1 187 0.2 0.192079 GO:0016791 phosphoric monoester hydrolase activity 3 1366 1.5 0.19663 GO:0017076 purine nucleotide binding 3 1374 1.5 0.199006 GO:0000166 nucleotide binding 1 200 0.2 0.204055 GO:0005829 cytosol 1 203 0.2 0.206795 GO:0000003 reproduction 1 203 0.2 0.206795 GO:0019953 sexual reproduction 2 749 0.8 0.206951 GO:0016301 kinase activity 1 204 0.2 0.207706 GO:0007010 cytoskeleton organization and biogenesis 1 211 0.2 0.214058 GO:0004518 nuclease activity 2 771 0.8 0.216224 GO:0016772 transferase activity, transferring phosphorus-containing groups 1 2374 2.6 0.222809 u GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism 10 7041 7.9 0.223074 GO:0005488 binding 1 2359 2.6 0.226086 u GO:0004872 receptor activity 1 235 0.2 0.235475 GO:0009613 response to pest/pathogen/parasite 1 243 0.2 0.242492 GO:0042578 phosphoric ester hydrolase activity 1 244 0.2 0.243365 GO:0006996 organelle organization and biogenesis 1 259 0.2 0.256345 GO:0007399 neurogenesis 1 262 0.2 0.258916 GO:0019752 carboxylic acid metabolism 1 265 0.3 0.261478 GO:0006082 organic acid metabolism 8 5553 6.2 0.264352 GO:0005622 intracellular 1 280 0.3 0.274166 GO:0005794 Golgi apparatus 1 286 0.3 0.279184 GO:0007028 cytoplasm organization and biogenesis 1 293 0.3 0.284997 GO:0005975 carbohydrate metabolism 3 1656 1.8 0.287038 GO:0006810 transport 1 327 0.3 0.312612 GO:0005783 endoplasmic reticulum 2 2958 3.3 0.318161 u GO:0004871 signal transducer activity 1 345 0.3 0.326823 GO:0004674 protein serine/threonine kinase activity 1 1922 2.1 0.339005 u GO:0007166 cell surface receptor linked signal transduction 2 1058 1.1 0.3394 GO:0050896 response to stimulus 2 1095 1.2 0.355196 GO:0008270 zinc ion binding 1 384 0.4 0.356676 GO:0030234 enzyme regulator activity 1 390 0.4 0.361157 GO:0007155 cell adhesion 4 2750 3.1 0.380393 GO:0008151 cell growth and/or maintenance 1 433 0.4 0.392424 GO:0005102 receptor binding 2 2670 3 0.393839 u GO:0005634 nucleus 1 456 0.5 0.408554 GO:0004175 endopeptidase activity 1 491 0.5 0.432331 GO:0007049 cell cycle 1 496 0.5 0.435653 GO:0004672 protein kinase activity 1 505 0.5 0.441588 GO:0006259 DNA metabolism 1 1604 1.8 0.443301 u GO:0003677 DNA binding 1 509 0.5 0.444207 GO:0006468 protein amino acid phosphorylation 2 1372 1.5 0.469343 GO:0016740 transferase activity 1 559 0.6 0.475986 GO:0016310 phosphorylation 2 1415 1.6 0.486185 GO:0007275 development 1 578 0.6 0.487609 GO:0009607 response to biotic stimulus 4 3131 3.5 0.48776 GO:0050875 cellular physiological process 1 582 0.6 0.490025 GO:0016043 cell organization and biogenesis 1 590 0.6 0.494825 GO:0006508 proteolysis and peptidolysis 1 610 0.6 0.50664 GO:0030163 protein catabolism 1 613 0.6 0.50839 GO:0009057 macromolecule catabolism 1 619 0.7 0.511872 GO:0008283 cell proliferation 1 622 0.7 0.513604 GO:0008233 peptidase activity 1 625 0.7 0.515331 GO:0005198 structural molecule activity 1 634 0.7 0.520476 GO:0005886 plasma membrane 1 698 0.7 0.555615 GO:0009887 organogenesis 1 723 0.8 0.568674 GO:0005576 extracellular 1 822 0.9 0.616936 GO:0009653 morphogenesis 1 879 0.9 0.642376 GO:0009605 response to external stimulus 1 884 1 0.735497 u GO:0050874 organismal physiological process