Improbizer Results

Improbizer will display the results in parts. First it will display the profiles (consensus sequences with the probability of each base at each position) individually as they are calculated. The position of a profile in a sequence is indicated by upper case. The strength of the profile match is indicated by the score on the left. There will be a delay during this phase as each profile is calculated. Second Improbizer will display all profiles at once over each sequence. Each profile has it's own color and the stronger the profile matches the darker it will appear in the sequence. Finally there will be a graphic summary of all the profiles at the end, using the same color conventions.

Looking for 2 motifs in 14 sequences. Longest sequence is 150 bases.

Settings are use location; don't include reverse complement; 1 occurrences per sequence; right align; restrain expansionist tendencies 6.000000; number of sequences in initial scan 1000; background model m2; background data ms.mm2.cassette.skip_2.down.fa;

7.3420 @ 68.91 sd 24.79 CTACTAAC
	a  0.211 0.217 0.777 0.287 0.074 0.855 0.854 0.144 
	c  0.501 0.216 0.074 0.707 0.003 0.069 0.003 0.784 
	g  0.145 0.074 0.145 0.003 0.003 0.003 0.140 0.003 
	t  0.143 0.493 0.003 0.003 0.919 0.073 0.003 0.069 
 8.22 G6843271@J908294@j_at.+.chr1:91532596-91532746       gtaccagtttgtgcaagtgtgagcccatgACACTAACccaccttaactttaaaaagcctcacagaggtcccatgagcatgctcactgtgaagggcaccggctatggaaagtgtagggtcatgggaattctaacatggcatgcatctgtcc
11.59 G6849168@J911119_RC@j_at.-.chr10:91329041-91329191   gtttgtgttgcatgctggactaaaacgttctgttgaaacgtgagttgtaagatatagactgCTACTAACaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
 8.48 G6956986@J914396_RC@j_at.-.chr11:102198358-102198508 gtaagtaataccttccctagatctttcagcttccgttgagcctttaCAAATAACacagtagagctggatacagcccaatattgggaagagagttttcccaccatgcatgagtcccacgctccaaaaaggaacaggattaaaaaacaccca
 5.76 G6966427@J922632_RC@j_at.-.chr17:3189717-3189867     gtaagatttgcttactctgagcttgccacaacgcctgctgGGAATAACcaactgcacccctcctgctattgaaaacacagctctaaactgctgctaagtcccttctgacgttccctccacccgggctccttgttgtctaactataaggca
 8.67 G6995328@J926515@j_at.+.chr19:26966204-26966354      gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggATGCTAACttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
 7.65 G7055471@J926807_RC@j_at.-.chr19:40100807-40100957   gtatctctctttggggctgtttcttttaattgtccgatcatgcatggtttctttccttctttgCTCCTAACaccatactgtgagccctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
 3.82 G7022373@J930882@j_at.+.chr3:33936171-33936321       gtaaggagaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttattttTTACTTAAttgctgtatggtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
10.05 G7100883@J934567@j_at.+.chr4:136915649-136915799     gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgCCACTAACctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccacgtagtgtgaacgcgtgtgtggt
 7.84 G7102920@J935010_RC@j_at.-.chr4:143261625-143261775  gtaaggaggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccaCTAATAGCctgggtcaacgcaaagctcctgatgggcttcgagggctgtactggg
 7.94 G7194535@J938668@j_at.+.chr6:50554055-50554205       gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtCAACTAAAtttaccttgattaaactttatcaccttgagttgtacattgcctgagccttgagctgcatgccaaactcaagttagctacctgtcaca
 9.30 G7195124@J940131_RC@j_at.-.chr6:143169879-143170029  gtagttgtcttagtggcatcctccgctgagtaaagcagagagcaggctgtgattaagaggagtggggcttggagggggagGAACTAACcacagggtctaactgcacagtcagctcacccgaatgcttgcattgtgtgtggcatcttatgt
 6.38 G7195124@J940136_RC@j_at.-.chr6:143234773-143234923  gttagccatctcttaggctcttatttgacggggagtgtgtatgttactctgtaggctgaggtCTGCAAACgtgtccaaatgtggatcttgagtctctttgctgtgatcacagccttgacaatctttaaagtgtactcaggtgagtttatc
 4.67 G7213904@J947085_RC@j_at.-.chr9:67627939-67628089    gtaaatgttcatgcaccctgcctgcttgctccctccccctcatgcttgtgtgatgacctcaccgtggctcccttctctgtccgtggtcctcatttctgcaccttttgttggctttctTCAATAACctaggatagattttcttttttcaca
 2.42 G7224708@J948118@j_at.+.chr9:119301821-119301971     gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagccctggctgtcctggaacaattgATACTCGTttgccgcctccctcccttcccctcac
7.5021 @ 62.27 sd 34.34 ACGTTGAGC
	a  0.499 0.003 0.003 0.074 0.216 0.145 0.707 0.003 0.069 
	c  0.358 0.924 0.211 0.287 0.003 0.074 0.003 0.145 0.499 
	g  0.003 0.003 0.641 0.145 0.145 0.778 0.003 0.848 0.003 
	t  0.140 0.069 0.145 0.494 0.636 0.003 0.286 0.003 0.428 
 6.96 G6843271@J908294@j_at.+.chr1:91532596-91532746       gtaccagtttgtgcaagtgtgagcccatgacactaacccaccttaactttaaaaagcctcacagaggtCCCATGAGCatgctcactgtgaagggcaccggctatggaaagtgtagggtcatgggaattctaacatggcatgcatctgtcc
 6.93 G6849168@J911119_RC@j_at.-.chr10:91329041-91329191   gtttgtgttgcatgctggactaaaACGTTCTGTtgaaacgtgagttgtaagatatagactgctactaacaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
11.93 G6956986@J914396_RC@j_at.-.chr11:102198358-102198508 gtaagtaataccttccctagatctttcagcttCCGTTGAGCctttacaaataacacagtagagctggatacagcccaatattgggaagagagttttcccaccatgcatgagtcccacgctccaaaaaggaacaggattaaaaaacaccca
 7.96 G6966427@J922632_RC@j_at.-.chr17:3189717-3189867     gtaagatttgcttACTCTGAGCttgccacaacgcctgctgggaataaccaactgcacccctcctgctattgaaaacacagctctaaactgctgctaagtcccttctgacgttccctccacccgggctccttgttgtctaactataaggca
 8.09 G6995328@J926515@j_at.+.chr19:26966204-26966354      gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggatgctaacttaagcctgaagacccagtgCCGCTGACCcactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
 7.42 G7055471@J926807_RC@j_at.-.chr19:40100807-40100957   gtatctctctttggggctgtttcttttaattgtccgatcatgcatggtttctttccttctttgctcctaacaccatACTGTGAGCcctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
 5.39 G7022373@J930882@j_at.+.chr3:33936171-33936321       gtaaggagaatttaacctgtagggtttttgtttctttttctatgatttTCGTAATGTttagatttatttattttttacttaattgctgtatggtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
 7.22 G7100883@J934567@j_at.+.chr4:136915649-136915799     gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgccactaacctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccACGTAGTGTgaacgcgtgtgtggt
 7.33 G7102920@J935010_RC@j_at.-.chr4:143261625-143261775  gtaaggaggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccactaatagcctgggtcaACGCAAAGCtcctgatgggcttcgagggctgtactggg
 7.72 G7194535@J938668@j_at.+.chr6:50554055-50554205       gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcaactaaatttaccttgattaaactttatcACCTTGAGTtgtacattgcctgagccttgagctgcatgccaaactcaagttagctacctgtcaca
10.20 G7195124@J940131_RC@j_at.-.chr6:143169879-143170029  gtagttgtcttagtggcatcctCCGCTGAGTaaagcagagagcaggctgtgattaagaggagtggggcttggagggggaggaactaaccacagggtctaactgcacagtcagctcacccgaatgcttgcattgtgtgtggcatcttatgt
 8.05 G7195124@J940136_RC@j_at.-.chr6:143234773-143234923  gttagccatctcttaggctcttatttgACGGGGAGTgtgtatgttactctgtaggctgaggtctgcaaacgtgtccaaatgtggatcttgagtctctttgctgtgatcacagccttgacaatctttaaagtgtactcaggtgagtttatc
 7.22 G7213904@J947085_RC@j_at.-.chr9:67627939-67628089    gtaaatgttcatgcaccctgcctgcttgctccctccccctcatgcttgtgtgatgacctcaccgtggctcccttctctgtCCGTGGTCCtcatttctgcaccttttgttggctttcttcaataacctaggatagattttcttttttcaca
 2.61 G7224708@J948118@j_at.+.chr9:119301821-119301971     gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttTTCTTGAGAcaggaatttttaatgtagccctggctgtcctggaacaattgatactcgtttgccgcctccctcccttcccctcac
Color Coding for Profiles
7.3420 @ 68.91 sd 24.79 CTACTAAC
	a  0.211 0.217 0.777 0.287 0.074 0.855 0.854 0.144 
	c  0.501 0.216 0.074 0.707 0.003 0.069 0.003 0.784 
	g  0.145 0.074 0.145 0.003 0.003 0.003 0.140 0.003 
	t  0.143 0.493 0.003 0.003 0.919 0.073 0.003 0.069 
7.5021 @ 62.27 sd 34.34 ACGTTGAGC
	a  0.499 0.003 0.003 0.074 0.216 0.145 0.707 0.003 0.069 
	c  0.358 0.924 0.211 0.287 0.003 0.074 0.003 0.145 0.499 
	g  0.003 0.003 0.641 0.145 0.145 0.778 0.003 0.848 0.003 
	t  0.140 0.069 0.145 0.494 0.636 0.003 0.286 0.003 0.428 
Colored Text View of Profiles
Different colors represent different profiles. Darker colors
represent stronger matches to profile.

G6843271@J908294@j_at.+.chr1:91532596-91532746       gtaccagtttgtgcaagtgtgagcccatgacactaacccaccttaactttaaaaagcctcacagaggtcccatgagcatgctcactgtgaagggcaccggctatggaaagtgtagggtcatgggaattctaacatggcatgcatctgtcc
G6849168@J911119_RC@j_at.-.chr10:91329041-91329191   gtttgtgttgcatgctggactaaaacgttctgttgaaacgtgagttgtaagatatagactgctactaacaagctgtgtggaaacctaattgcccaggaggtaagttgatgcacactaatacgagtccatattaaaatgcacggtgtgtct
G6956986@J914396_RC@j_at.-.chr11:102198358-102198508 gtaagtaataccttccctagatctttcagcttccgttgagcctttacaaataacacagtagagctggatacagcccaatattgggaagagagttttcccaccatgcatgagtcccacgctccaaaaaggaacaggattaaaaaacaccca
G6966427@J922632_RC@j_at.-.chr17:3189717-3189867     gtaagatttgcttactctgagcttgccacaacgcctgctgggaataaccaactgcacccctcctgctattgaaaacacagctctaaactgctgctaagtcccttctgacgttccctccacccgggctccttgttgtctaactataaggca
G6995328@J926515@j_at.+.chr19:26966204-26966354      gtaagaagaccagtgtgcagtggcatatcccagagacccttttcctaaagaaaggcaggcaagggatgctaacttaagcctgaagacccagtgccgctgacccactttgcagtggctttgctgtctgctcaatatttgtccttcctaacc
G7055471@J926807_RC@j_at.-.chr19:40100807-40100957   gtatctctctttggggctgtttcttttaattgtccgatcatgcatggtttctttccttctttgctcctaacaccatactgtgagccctaatcctcgcatgtgtagaaggcatttcctctccctaagttgtttcctctgtgtgtgcgtgtg
G7022373@J930882@j_at.+.chr3:33936171-33936321       gtaaggagaatttaacctgtagggtttttgtttctttttctatgattttcgtaatgtttagatttatttattttttacttaattgctgtatggtcagttgtttcccttaagagatgatatttaaagaagatccttgtttctatcccaggc
G7100883@J934567@j_at.+.chr4:136915649-136915799     gtatcctgtctgaagggcgtgaggcctccccactaaacaggactcaccaacctgctgagaccctgccactaacctgtgtctgctcacagctgctgggcagccacattaacgcatagtctcagccccacgtagtgtgaacgcgtgtgtggt
G7102920@J935010_RC@j_at.-.chr4:143261625-143261775  gtaaggaggtggtgtggattcagggagccacacctgagatccaggcaccttgcactgatttttgctactgctgtgcaaacacctaatactcctccactaatagcctgggtcaacgcaaagctcctgatgggcttcgagggctgtactggg
G7194535@J938668@j_at.+.chr6:50554055-50554205       gtatgataccatgtgaaaacattctctggtattcccattgttctgtcttagcagtcaactaaatttaccttgattaaactttatcaccttgagttgtacattgcctgagccttgagctgcatgccaaactcaagttagctacctgtcaca
G7195124@J940131_RC@j_at.-.chr6:143169879-143170029  gtagttgtcttagtggcatcctccgctgagtaaagcagagagcaggctgtgattaagaggagtggggcttggagggggaggaactaaccacagggtctaactgcacagtcagctcacccgaatgcttgcattgtgtgtggcatcttatgt
G7195124@J940136_RC@j_at.-.chr6:143234773-143234923  gttagccatctcttaggctcttatttgacggggagtgtgtatgttactctgtaggctgaggtctgcaaacgtgtccaaatgtggatcttgagtctctttgctgtgatcacagccttgacaatctttaaagtgtactcaggtgagtttatc
G7213904@J947085_RC@j_at.-.chr9:67627939-67628089    gtaaatgttcatgcaccctgcctgcttgctccctccccctcatgcttgtgtgatgacctcaccgtggctcccttctctgtccgtggtcctcatttctgcaccttttgttggctttcttcaataacctaggatagattttcttttttcaca
G7224708@J948118@j_at.+.chr9:119301821-119301971     gttggttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggtttggttttcttgagacaggaatttttaatgtagccctggctgtcctggaacaattgatactcgtttgccgcctccctcccttcccctcac
Graphical Summary of Profile Hits
Colors represent different profiles. Darker colors represent
stronger matches to profile.