Improbizer Results

Improbizer will display the results in parts. First it will display the profiles (consensus sequences with the probability of each base at each position) individually as they are calculated. The position of a profile in a sequence is indicated by upper case. The strength of the profile match is indicated by the score on the left. There will be a delay during this phase as each profile is calculated. Second Improbizer will display all profiles at once over each sequence. Each profile has it's own color and the stronger the profile matches the darker it will appear in the sequence. Finally there will be a graphic summary of all the profiles at the end, using the same color conventions.

Looking for 4 motifs in 4 sequences. Longest sequence is 150 bases.

Settings are use location; don't include reverse complement; 1 occurrences per sequence; right align; restrain expansionist tendencies 6.000000; number of sequences in initial scan 1000; background model m2; background data fa/mm2.control.gold.down.fa;

8.3496 @ 95.25 sd 11.61 GAGGCAA
	a  0.003 0.743 0.003 0.250 0.003 0.990 0.990 
	c  0.003 0.250 0.250 0.250 0.743 0.003 0.003 
	g  0.990 0.003 0.743 0.497 0.250 0.003 0.003 
	t  0.003 0.003 0.003 0.003 0.003 0.003 0.003 
 7.73 G6813886@J909757@j_at.+.chr10:17982776-17982926     gtaagtcaatcacttagcttgcttgtttgaaattaattttattaacccaatatccatcattatggtttttactgatatgcatgattcagtgtagtgcttaGAGGGAAagttggcaggcctttggggttttttgggttttgtgggtttttg
 9.26 G6926528@J913333@j_at.+.chr11:78136170-78136320     gtacccacacctgttggctgcaggctgtgacgtttgggtgggggaggcttggtgtgtgacctcggggtctcatctccctgagccccctgcatgcttggGAGGCAAccagcaggggccaggccatccctcatgtctggcctctctcctccc
 8.77 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttGCGACAAggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
 7.63 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtgGACCCAActgtgtgtaccatttcagttcaagttagcttgtgcc
8.5510 @ 16.25 sd 12.77 GACAATT
	a  0.003 0.743 0.003 0.497 0.743 0.003 0.250 
	c  0.003 0.003 0.990 0.003 0.003 0.003 0.250 
	g  0.990 0.003 0.003 0.250 0.003 0.003 0.003 
	t  0.003 0.250 0.003 0.250 0.250 0.990 0.497 
 7.82 G6813886@J909757@j_at.+.chr10:17982776-17982926     gtaaGTCAATCacttagcttgcttgtttgaaattaattttattaacccaatatccatcattatggtttttactgatatgcatgattcagtgtagtgcttagagggaaagttggcaggcctttggggttttttgggttttgtgggtttttg
 7.97 G6926528@J913333@j_at.+.chr11:78136170-78136320     gtacccacacctgttggctgcaggctgtGACGTTTgggtgggggaggcttggtgtgtgacctcggggtctcatctccctgagccccctgcatgcttgggaggcaaccagcaggggccaggccatccctcatgtctggcctctctcctccc
 7.88 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtaGACTATAatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
10.54 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccGACAATTttatatttgttgttttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
8.9834 @ 61.50 sd 7.12 ATGGTAT
	a  0.743 0.003 0.003 0.003 0.003 0.497 0.003 
	c  0.003 0.003 0.003 0.003 0.003 0.250 0.003 
	g  0.250 0.497 0.990 0.990 0.003 0.003 0.003 
	t  0.003 0.497 0.003 0.003 0.990 0.250 0.990 
 9.09 G6813886@J909757@j_at.+.chr10:17982776-17982926     gtaagtcaatcacttagcttgcttgtttgaaattaattttattaacccaatatccatcattATGGTTTttactgatatgcatgattcagtgtagtgcttagagggaaagttggcaggcctttggggttttttgggttttgtgggtttttg
 9.36 G6926528@J913333@j_at.+.chr11:78136170-78136320     gtacccacacctgttggctgcaggctgtgacgtttgggtgggggaggcttggtgtgtgacctcGGGGTCTcatctccctgagccccctgcatgcttgggaggcaaccagcaggggccaggccatccctcatgtctggcctctctcctccc
 8.43 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaAGGGTATctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
 9.05 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttcaaggttaatgttactatATGGTATtttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
8.2651 @ 44.75 sd 17.34 GCTTGTT
	a  0.003 0.003 0.003 0.003 0.003 0.003 0.003 
	c  0.003 0.497 0.003 0.003 0.003 0.003 0.003 
	g  0.743 0.497 0.003 0.003 0.990 0.250 0.003 
	t  0.250 0.003 0.990 0.990 0.003 0.743 0.990 
 8.37 G6813886@J909757@j_at.+.chr10:17982776-17982926     gtaagtcaatcacttagcttGCTTGTTtgaaattaattttattaacccaatatccatcattatggtttttactgatatgcatgattcagtgtagtgcttagagggaaagttggcaggcctttggggttttttgggttttgtgggtttttg
 8.27 G6926528@J913333@j_at.+.chr11:78136170-78136320     gtacccacacctgttggctgcaggctgtgacgtttgggtgggggagGCTTGGTgtgtgacctcggggtctcatctccctgagccccctgcatgcttgggaggcaaccagcaggggccaggccatccctcatgtctggcctctctcctccc
 8.44 G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgGGTTGTTgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
 7.98 G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatattTGTTGTTttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
Color Coding for Profiles
8.3496 @ 95.25 sd 11.61 GAGGCAA
	a  0.003 0.743 0.003 0.250 0.003 0.990 0.990 
	c  0.003 0.250 0.250 0.250 0.743 0.003 0.003 
	g  0.990 0.003 0.743 0.497 0.250 0.003 0.003 
	t  0.003 0.003 0.003 0.003 0.003 0.003 0.003 
8.5510 @ 16.25 sd 12.77 GACAATT
	a  0.003 0.743 0.003 0.497 0.743 0.003 0.250 
	c  0.003 0.003 0.990 0.003 0.003 0.003 0.250 
	g  0.990 0.003 0.003 0.250 0.003 0.003 0.003 
	t  0.003 0.250 0.003 0.250 0.250 0.990 0.497 
8.9834 @ 61.50 sd 7.12 ATGGTAT
	a  0.743 0.003 0.003 0.003 0.003 0.497 0.003 
	c  0.003 0.003 0.003 0.003 0.003 0.250 0.003 
	g  0.250 0.497 0.990 0.990 0.003 0.003 0.003 
	t  0.003 0.497 0.003 0.003 0.990 0.250 0.990 
8.2651 @ 44.75 sd 17.34 GCTTGTT
	a  0.003 0.003 0.003 0.003 0.003 0.003 0.003 
	c  0.003 0.497 0.003 0.003 0.003 0.003 0.003 
	g  0.743 0.497 0.003 0.003 0.990 0.250 0.003 
	t  0.250 0.003 0.990 0.990 0.003 0.743 0.990 
Colored Text View of Profiles
Different colors represent different profiles. Darker colors
represent stronger matches to profile.

G6813886@J909757@j_at.+.chr10:17982776-17982926     gtaagtcaatcacttagcttgcttgtttgaaattaattttattaacccaatatccatcattatggtttttactgatatgcatgattcagtgtagtgcttagagggaaagttggcaggcctttggggttttttgggttttgtgggtttttg
G6926528@J913333@j_at.+.chr11:78136170-78136320     gtacccacacctgttggctgcaggctgtgacgtttgggtgggggaggcttggtgtgtgacctcggggtctcatctccctgagccccctgcatgcttgggaggcaaccagcaggggccaggccatccctcatgtctggcctctctcctccc
G6962649@J929579_RC@j_at.-.chr2:131276349-131276499 gtagactataatagcttttctgaggctaggctgtcctgggggctggtgttaagggtatctcaaagggtgggttgttgcgacaaggcccagaccctaagatgataactttttcccacaggttcgaacctcagatatgggtggttatgccac
G7212061@J944870@j_at.+.chr8:85548862-85549012      gtaagtgtatagaccccaaaagggtcaaccgacaattttatatttgttgttttcaaggttaatgttactatatggtattttttgtttcttttatgtcccctttggtggacccaactgtgtgtaccatttcagttcaagttagcttgtgcc
Graphical Summary of Profile Hits
Colors represent different profiles. Darker colors represent
stronger matches to profile.