Looking for motifs in different sets for exons that are included. The _0, _1, _1.5,... are thresholds for how much more the brain (muscle,etc) includes the tissue. So Brain Specific Inc_2 is more stringent than Inc_1.

File	Score	motif	Controls
Brain Specific Inc_0 5'ss	8.3474	GTAAGT	4.617712 (4.4639-4.8293 N=100)
Brain Specific Inc_0 3'ss	5.4432	TGTCTTC	4.607769 (4.4241-4.7666 N=100)
Brain Specific Inc_1 5'ss	8.3496	GTAAGT	4.681402 (4.5369-4.8954 N=100)
Brain Specific Inc_1 3'ss	5.3328	TCTCTTC	4.679792 (4.5308-4.9019 N=100)
Brain Specific Inc_1.5 5'ss	8.3939	GTAAGT	4.929235 (4.7386-5.2294 N=100)
Brain Specific Inc_1.5 3'ss	5.4878	TGCTTTC	4.927161 (4.6927-5.1873 N=100)
Brain Specific Inc_1.75 5'ss	8.6752	GTAAGTG	5.040338 (4.8477-5.4060 N=100)
Brain Specific Inc_1.75 3'ss	5.6471	TGCTTTC	5.033873 (4.8092-5.2485 N=100)
Brain Specific Inc_2 5'ss	8.6361	GTAAGTA	5.150008 (4.8331-5.5735 N=100)
Brain Specific Inc_2 3'ss	5.5369	TCTTGCT	5.14519 (4.8634-5.6729 N=100)
Brain/Muscle Sp. Inc_0 5'ss	8.4631	GTAAGT	4.663078 (4.5198-4.8026 N=100)
Brain/Muscle Sp. Inc_0 3'ss	5.2870	CTTTCTCT	4.644836 (4.4766-4.8368 N=100)
Brain/Muscle Sp. Inc_1 5'ss	8.3356	GTAAGTG	4.739116 (4.6096-4.9908 N=100)
Brain/Muscle Sp. Inc_1 3'ss	5.5444	TCTCTTC	4.737785 (4.5922-4.9500 N=100)
Brain/Muscle Sp. Inc_1.5 5'ss	8.4498	GTAAGT	4.990939 (4.8125-5.2407 N=100)
Brain/Muscle Sp. Inc_1.5 3'ss	5.8739	TCTTTCT	5.008539 (4.7904-5.2274 N=100)
Brain/Muscle Sp. Inc_1.75 5'ss	8.5430	GTAAGT	5.075632 (4.8761-5.3043 N=100)
Brain/Muscle Sp. Inc_1.75 3'ss	6.1497	TTTCCTT	5.083475 (4.8466-5.4694 N=100)
Brain/Muscle Sp. Inc_2 5'ss	5.6008	CTTCCTT	5.252691 (4.9918-5.5692 N=100)
Brain/Muscle Sp. Inc_2 3'ss	6.4122	TTCCTTTT	5.276122 (4.9982-5.5935 N=100)
Muscle Specific Inc_0 5'ss	6.4553	TGCTAAC	5.981069 (5.6356-6.5999 N=100)
Muscle Specific Inc_0 3'ss	7.3153	ATCTTTTT	5.994661 (5.5416-6.6420 N=100)
Muscle Specific Inc_1 5'ss	7.2946	GCTACTAAC	6.061819 (5.6095-6.7057 N=100)
Muscle Specific Inc_1 3'ss	6.5295	CTTTACCA	6.046741 (5.6447-6.4252 N=100)
Muscle Specific Inc_1.5 5'ss	7.4156	GCTACTAAC	6.080146 (5.5912-6.9590 N=100)
Muscle Specific Inc_1.5 3'ss	6.6465	CTTCACC	6.008747 (5.6393-6.5593 N=100)
Muscle Specific Inc_1.75 5'ss	6.9601	CTACTAAC	6.272481 (5.8699-6.9257 N=100)
Muscle Specific Inc_1.75 3'ss	7.4233	AGTTTACC	6.246109 (5.8148-6.7219 N=100)
Muscle Specific Inc_2 5'ss	7.3420	CTACTAAC	6.436494 (6.0245-7.0503 N=100)
Muscle Specific Inc_2 3'ss	7.9755	TTTTGTTTC	6.473104 (5.8929-7.5238 N=100)