Supplementary Online Material for Chakrabarti et al. 2007 RNA

Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis

Kausik Chakrabarti^1,2, Michael Pearson¹, Leslie Grate¹, Timothy Sterne-Weiler², Jonathan Deans², John Paul Donohue¹ and Manuel Ares, Jr^1,2,*

¹Department of Molecular, Cell and Developmental Biology

Center for Molecular Biology of RNA

University of California Santa Cruz, Santa Cruz, CA 95064

²Hughes Undergraduate Research Laboratory

University of California Santa Cruz, Santa Cruz, CA 95064

* To whom correspondence should be addressed: ares@biology.ucsc.edu

Merged Complete Supplement (9 Figures, 2 Tables, Legends) [pdf 3.1 Mb]

Individual Files are linked below:

Legends for Supplementary Figures and Tables. [pdf 28 Kb]

Supplementary Table 1. Genomic coordinates and detection probes for P.falciparum structural RNAs. [pdf 16 Kb]

Supplementary Table 2. Features and genomic location of ribosomal RNAs (rRNAs) and transfer RNAs (tRNAs) in P.falciparum. [pdf 164 Kb]

Supplementary Figure 1. Additional mapping data on telomerase RNA [pdf 732 Kb]

Supplementary Figure 2. Sequence Alignment of P.falciparum U1 snRNA. [pdf 160 Kb]

Supplementary Figure 3. Sequence Alignment of P.falciparum U2 snRNA. [pdf 280 Kb]

Supplementary Figure 4. Sequence Alignment of P.falciparum U4 snRNA. [pdf 236 Kb]

Supplementary Figure 5. Sequence Alignment of P.falciparum U5 snRNA. [pdf 240 Kb]

Supplementary Figure 6. Sequence Alignment of P.falciparum U6 snRNA. [pdf 232 Kb]

Supplementary Figure 7. (a) Mapping 5' ends of RNAse MRP RNA, RNAse P RNA, U3 snoRNA, and SRP RNA. (b.) U3 RNA alignments. [pdf 768 Kb]

Supplementary Figure 8. Sequence Alignment of the small nuclear RNA promoter element (SNPE). [pdf 124 Kb]

Supplementary Figure 9. (a.) P.falciparum SRP-RNA detected by Northern blot (b.). Sequence Alignment of SRP RNA. [pdf 656 Kb]